Bürger, M., Chory, J. Identification challenges of Castilleja (Orobanchaceae) on iNaturalist. (2024) PLOS One. 19(10):e0311088. DOI: 10.1371/journal.pone.0311088

Navarro, M.A., Navarro, C., Hernández, L.E., Garnica, M., Franco-Zorrilla, J.M., Burko, Y., González-Serrano, S., García-Mina, J.M., Pruneda-Paz, J., Chory, J., Leyva, A. GLABRA2 transcription factor integrates arsenic tolerance with epidermal cell fate determination. (2024) New Phytol. DOI: 10.1111/nph.20099

Martínez-Vasallo, C., Cole, B., Pérez-Alemany, J., Ortiz-Ramírez, C.I., Gallego-Bartolomé, J., Chory, J., Kay, S.A., Nohales, M.A. GIGANTEA adjusts the response to shade at dusk by directly impinging on PHYTOCHROME INTERACTING FACTOR 7 function. (2024) Proceedings of the National Academy of Sciences of the United States of America. 121(30):e2315778121. DOI: 10.1073/pnas.2315778121

Bürger, M., Chory, J. A potential role of heat-moisture couplings in the range expansion of . [Pubmed] (2024) Ecol Evol. 14(5):e11332. DOI: 10.1002/ece3.11332

Procko, C., Chory, J. Carnivorous plant evolution: is a killer defense always the best option? [Pubmed] (2024) J Exp Bot. 75(1):9-12. DOI: 10.1093/jxb/erad431

Procko, C., Chory, J., Pirro, S. The Genome Sequences of 17 Species of Carnivorous Plants. [Pubmed] (2023) Biodivers Genomes. 2023. DOI: 10.56179/001c.90164

Procko, C., Wong, W.M., Patel, J., Mousavi, S.A.R., Dabi, T., Duque, M., Baird, L., Chalasani, S.H., Chory, J. Mutational analysis of mechanosensitive ion channels in the carnivorous Venus flytrap plant. (2023) Current Biology. DOI: 10.1016/j.cub.2023.06.048

Huang, J., Zhao, X., Bürger, M., Chory, J., Wang, X. The role of ethylene in plant temperature stress response. (2023) Trends in Plant Science. DOI: 10.1016/j.tplants.2023.03.001

Takei, S., Uchiyama, Y., Bürger, M., Suzuki, T., Okabe, S., Chory, J., Seto, Y. A Divergent Clade KAI2 Protein in the Root Parasitic Plant Orobanche minor Is a Highly Sensitive Strigolactone Receptor and Is Involved in the Perception of Sesquiterpene Lactones. [Pubmed] (2023) Plant & Cell Physiology. DOI: 10.1093/pcp/pcad026

Martínez-Vasallo, C., Cole, B., Gallego-Bartolomé, J., Chory, J., Kay, S.A., Nohales, M.A. Epidermal GIGANTEA adjusts the response to shade at dusk by directly impinging on PHYTOCHROME INTERACTING FACTOR 7 function. (2023) bioRxiv. DOI: 10.1101/2023.03.21.533699

Eckardt, N.A., Ainsworth, E.A., Bahuguna, R.N., Broadley, M.R., Busch, W., Carpita, N.C., Castrillo, G., Chory, J., DeHaan, L.R., Duarte, C.M., Henry, A., Jagadish, S.V.K., Langdale, J., Leakey, A.D.B., Liao, J.C., Lu, K.J., McCann, M.C., McKay, J.K., Odeny, D.A., Olivieira, E., Platten, J.D., Rabbi, I., Rim, E.Y., Ronald, P.C., Salt, D.E., Shigenaga, A.M., Wang, E., Wolfe, M., Zhang, X. Climate change challenges, plant science solutions. (2022) Plant Cell. DOI: 10.1093/plcell/koac303

Bürger, M., Honda, K., Kondoh, Y., Hong, S., Watanabe, N., Osada, H., Chory, J. Crystal structure of DWARF14-LIKE2 (DLK2) reveals a distinct substrate binding pocket architecture. (2022) Plant Direct. 6(9):e446. DOI: 10.1002/pld3.446

Burko, Y., Willige, B.C., Seluzicki, A., Novák, O., Ljung, K., Chory, J. PIF7 is a master regulator of thermomorphogenesis in shade. (2022) Nature Communications. 13(1):4942. DOI: 10.1038/s41467-022-32585-6

Procko, C., Radin, I., Hou, C., Richardson, R.A., Haswell, E.S., Chory, J. Dynamic calcium signals mediate the feeding response of the carnivorous sundew plant. (2022) Proceedings of the National Academy of Sciences of the United States of America. 119(30):e2206433119. DOI: 10.1073/pnas.2206433119

Procko, C., Lee, T., Borsuk, A., Bargmann, B.O.R., Dabi, T., Nery, J.R., Estelle, M., Baird, L., O'Connor, C., Brodersen, C., Ecker, J.R., Chory, J. Leaf cell-specific and single-cell transcriptional profiling reveals a role for the palisade layer in UV light protection. (2022) Plant Cell. DOI: 10.1093/plcell/koac167

Fisher, K.E., Krishnamoorthy, P., Joens, M.S., Chory, J., Fitzpatrick, J.A.J., Woodson, J.D. Singlet Oxygen Leads to Structural Changes to Chloroplasts during their Degradation in the Arabidopsis thaliana plastid ferrochelatase two Mutant. (2022) Plant & Cell Physiology. 63(2):248-264. DOI: 10.1093/pcp/pcab167

Willige, B.C., Zander, M., Yoo, C.Y., Phan, A., Garza, R.M., Trigg, S.A., He, Y., Nery, J.R., Chen, H., Chen, M., Ecker, J.R., Chory, J. PHYTOCHROME-INTERACTING FACTORs trigger environmentally responsive chromatin dynamics in plants. (2021) Nature Genetics. DOI: 10.1038/s41588-021-00882-3

Procko, C., Murthy, S., Keenan, W.T., Mousavi, S.A.R., Dabi, T., Coombs, A., Procko, E., Baird, L., Patapoutian, A., Chory, J. Stretch-activated ion channels identified in the touch-sensitive structures of carnivorous Droseraceae plants. (2021) Elife. 10. DOI: 10.7554/eLife.64250

Busch, W., Chory, J. Multikingdom diffusion barrier control. (2021) Science. 371(6525):125. DOI: 10.1126/science.abf5591

Huang, J., Zhao, X., Bürger, M., Wang, Y., Chory, J. Two interacting ethylene response factors regulate heat stress response. (2020) Plant Cell. DOI: 10.1093/plcell/koaa026

Burko, Y., Gaillochet, C., Seluzicki, A., Chory, J., Busch, W. Local HY5 Activity Mediates Hypocotyl Growth and Shoot-to-Root Communication. (2020) . 1(5). DOI: 10.1016/j.xplc.2020.100078

Bürger, M., Chory, J. In-silico analysis of the strigolactone ligand-receptor system. (2020) Plant Direct. 4(9):e00263. DOI: 10.1002/pld3.263

Alamdari, K., Fisher, K.E., Sinson, A.B., Chory, J., Woodson, J.D. Roles for the chloroplast-localized PPR Protein 30 and the "Mitochondrial" Transcription Termination Factor 9 in chloroplast quality control. (2020) Plant Journal. DOI: 10.1111/tpj.14963

Burko, Y., Seluzicki, A., Zander, M., Pedmale, U., Ecker, J.R., Chory, J. Chimeric Activators and Repressors Define HY5 Activity and Reveal a Light-Regulated Feedback Mechanism. (2020) Plant Cell. 32(2). DOI: 10.1105/tpc.19.00772

Bürger, M., Chory, J. The Many Models of Strigolactone Signaling. (2020) Trends Plant Science. DOI: 10.1016/j.tplants.2019.12.009

Huang, J., Zhao, X., Chory, J. The Arabidopsis Transcriptome Responds Specifically and Dynamically to High Light Stress. (2019) Cell Reports. 29(12):4186-4199.e3. DOI: 10.1016/j.celrep.2019.11.051

Zhao, X., Huang, J., Chory, J. Unraveling the Linkage between Retrograde Signaling and RNA Metabolism in Plants. (2019) Trends in Plant Science. 25(2):141-147. DOI: 10.1016/j.tplants.2019.10.009

Conn, A., Chandrasekhar, A., Rongen, M.V., Leyser, O., Chory, J., Navlakha, S. Network trade-offs and homeostasis in Arabidopsis shoot architectures. (2019) PLOS Computational Biology. 15(9):e1007325. DOI: 10.1371/journal.pcbi.1007325

Bürger, M., Chory, J. Stressed Out About Hormones: How Plants Orchestrate Immunity. (2019) Cell Host & Microbe. 26(2):163-172. DOI: 10.1016/j.chom.2019.07.006

Zander, M., Willige, B.C., He, Y., Nguyen, T.A., Langford, A.E., Nehring, R., Howell, E., McGrath, R., Bartlett, A., Castanon, R., Nery, J.R., Chen, H., Zhang, Z., Jupe, F., Stepanova, A., Schmitz, R.J., Lewsey, M., Chory, J., Ecker, J.R. Epigenetic silencing of a multifunctional plant stress regulator. (2019) Elife. 8. DOI: 10.7554/eLife.47835

Li, B., Sun, L., Huang, J., Göschl, C., Shi, W., Chory, J., Busch, W. GSNOR provides plant tolerance to iron toxicity via preventing iron-dependent nitrosative and oxidative cytotoxicity. (2019) Nature Communications. 10(1):3896. DOI: 10.1038/s41467-019-11892-5

Procko, C., Morrison, S., Dunar, C., Mills, S., Maldonado, B., Cockrum, C., Peters, N.E., Huang, S.C., Chory, J. Big Data to the Bench: Transcriptome Analysis for Undergraduates. (2019) CBE Life Sciences Education. 18(2):ar19. DOI: 10.1187/cbe.18-08-0161

Zhao, X., Huang, J., Chory, J. GUN1 interacts with MORF2 to regulate plastid RNA editing during retrograde signaling. (2019) Proceedings of the National Academy of Sciences of the United States of America. DOI: 10.1073/pnas.1820426116

Ren, H., Willige, B.C., Jaillais, Y., Geng, S., Park, M.Y., Gray, W.M., Chory, J. BRASSINOSTEROID-SIGNALING KINASE 3, a plasma membrane-associated scaffold protein involved in early brassinosteroid signaling. (2019) PLOS Genetics. 15(1):e1007904. DOI: 10.1371/journal.pgen.1007904

Bürger, M., Mashiguchi, K., Lee, H.J., Nakano, M., Takemoto, K., Seto, Y., Yamaguchi, S., Chory, J. Structural Basis of Karrikin and Non-natural Strigolactone Perception in Physcomitrella patens. (2019) Cell Reports. 26(4):855-865.e5. DOI: 10.1016/j.celrep.2019.01.003

Gallego-Bartolomé, J., Liu, W., Kuo, P.H., Feng, S., Ghoshal, B., Gardiner, J., Zhao, J.M., Park, S.Y., Chory, J., Jacobsen, S.E. Co-targeting RNA Polymerases IV and V Promotes Efficient De Novo DNA Methylation in Arabidopsis. (2019) Cell. DOI: 10.1016/j.cell.2019.01.029

Bürger, M., Chory, J. Publisher Correction: Structural and chemical biology of deacetylases for carbohydrates, proteins, small molecules and histones. (2019) Communications Biology. 2(1):16. DOI: 10.1038/s42003-018-0258-5

Bürger, M., Chory, J. Structural and chemical biology of deacetylases for carbohydrates, proteins, small molecules and histones. (2018) Communications Biology. 1:217. DOI: 10.1038/s42003-018-0214-4

Calil, I.P., Quadros, I.P.S., Araújo, T.C., Duarte, C.E.M., Gouveia-Mageste, B.C., Silva, J.C.F., Brustolini, O.J.B., Teixeira, R.M., Oliveira, C.N., Milagres, R.W.M.M., Martins, G.S., Chory, J., Reis, P.A.B., Machado, J.P.B., Fontes, E.P.B. A WW domain-containing protein forms immune nuclear bodies against begomoviruses. (2018) Molecular Plant. DOI: 10.1016/j.molp.2018.09.009

Cagnola, J.I., Cerdan, P.D., Pacin, M., Andrade, A., Rodriguez, M.V., Zurbriggen, M., Legris, M., Buchovsky, S., Carrillo, N., Chory, J., Blazquez, M.A., Alabadi, D., Casal, J.J. Long-day photoperiod enhances jasmonic acid-related plant defense. (2018) Plant Physiology. DOI: 10.1104/pp.18.00443

Zhao, X., Huang, J., Chory, J. Genome uncoupled 1 mutants are hypersensitive to norflurazon and lincomycin. (2018) Plant Physiology. DOI: 10.1104/pp.18.00772

Willige, B.C., Chory, J., Bürger, M. Next Generation of Plant-Associated Bacterial Genome Data. (2018) Cell Host & Microbe. 24(1):10-11. DOI: 10.1016/j.chom.2018.06.009

Perrella, G., Davidson, M.L.H., O'Donnell, L., Nastase, A.M., Herzyk, P., Breton, G., Pruneda-Paz, J.L., Kay, S.A., Chory, J., Kaiserli, E. ZINC-FINGER interactions mediate transcriptional regulation of hypocotyl growth in . (2018) Proceedings of the National Academy of Sciences of the United States of America. DOI: 10.1073/pnas.1718099115

Liu, W., Duttke, S.H., Hetzel, J., Groth, M., Feng, S., Gallego-Bartolome, J., Zhong, Z., Kuo, H.Y., Wang, Z., Zhai, J., Chory, J., Jacobsen, S.E. RNA-directed DNA methylation involves co-transcriptional small-RNA-guided slicing of polymerase V transcripts in Arabidopsis. (2018) Nature Plants. 4(3):181-188. DOI: 10.1038/s41477-017-0100-y

Qiu, Y., Pasoreck, E.K., Reddy, A.K., Nagatani, A., Ma, W., Chory, J., Chen, M. Mechanism of early light signaling by the carboxy-terminal output module of Arabidopsis phytochrome B. (2017) Nature Communications. 8(1):1905. DOI: 10.1038/s41467-017-02062-6

Bürger, M., Willige, B.C., Chory, J. A hydrophobic anchor mechanism defines a deacetylase family that suppresses host response against YopJ effectors. (2017) Nature Communications. 8(1):2201. DOI: 10.1038/s41467-017-02347-w

Conn, A., Pedmale, U.V., Chory, J., Navlakha, S. High-Resolution Laser Scanning Reveals Plant Architectures that Reflect Universal Network Design Principles. (2017) Cell Systems. 5(1):53-62.e3. DOI: 10.1016/j.cels.2017.06.017

Conn, A., Pedmale, U.V., Chory, J., Stevens, C.F., Navlakha, S. A Statistical Description of Plant Shoot Architecture. (2017) Current Biology. 27(14):2078-2088.e3. DOI: 10.1016/j.cub.2017.06.009

Vermeer, J.E.M., van Wijk, R., Goedhart, J., Geldner, N., Chory, J., Gadella, T.W.J., Munnik, T. In Vivo Imaging of Diacylglycerol at the Cytoplasmic Leaflet of Plant Membranes. (2017) Plant & Cell Physiology. 58(7):1196-1207. DOI: 10.1093/pcp/pcx012

Seluzicki, A., Burko, Y., Chory, J. Dancing in the dark: darkness as a signal in plants. (2017) Plant, Cell & Environment. 40(11):2487-2501. DOI: 10.1111/pce.12900

Hetzel, J., Duttke, S.H., Benner, C., Chory, J. Nascent RNA sequencing reveals distinct features in plant transcription. (2016) Proceedings of the National Academy of Sciences of the United States of America. 113(43):12316-12321. DOI: 10.1073/pnas.1603217113

de Saint Germain, A., Clavé, G., Badet-Denisot, M.A., Pillot, J.P., Cornu, D., Le Caer, J.P., Burger, M., Pelissier, F., Retailleau, P., Turnbull, C., Bonhomme, S., Chory, J., Rameau, C., Boyer, F.D. An histidine covalent receptor and butenolide complex mediates strigolactone perception. (2016) Nature Chemical Biology. 12(10):787-794. DOI: 10.1038/nchembio.2147

Bjornson, M., Dandekar, A.M., Chory, J., Dehesh, K. Brassinosteroid's multi-modular interaction with the general stress network customizes stimulus-specific responses in Arabidopsis. (2016) Plant Science. 250:165-177. DOI: 10.1016/j.plantsci.2016.06.007

Procko, C., Burko, Y., Jaillais, Y., Ljung, K., Long, J.A., Chory, J. The epidermis coordinates auxin-induced stem growth in response to shade. (2016) Genes & Development. 30(13):1529-41. DOI: 10.1101/gad.283234.116

Yazaki, J., Galli, M., Kim, A.Y., Nito, K., Aleman, F., Chang, K.N., Carvunis, A.R., Quan, R., Nguyen, H., Song, L., Alvarez, J.M., Huang, S.S., Chen, H., Ramachandran, N., Altmann, S., Gutiérrez, R.A., Hill, D.E., Schroeder, J.I., Chory, J., LaBaer, J., Vidal, M., Braun, P., Ecker, J.R. Mapping transcription factor interactome networks using HaloTag protein arrays. (2016) Proceedings of the National Academy of Sciences of the United States of America. 113(29):E4238-47. DOI: 10.1073/pnas.1603229113

Zheng, Z., Guo, Y., Novák, O., Chen, W., Ljung, K., Noel, J.P., Chory, J. Local auxin metabolism regulates environment-induced hypocotyl elongation. (2016) Nature Plants. 2:16025. DOI: 10.1038/nplants.2016.25

Pedmale, U.V., Huang, S.S., Zander, M., Cole, B.J., Hetzel, J., Ljung, K., Reis, P.A., Sridevi, P., Nito, K., Nery, J.R., Ecker, J.R., Chory, J. Cryptochromes Interact Directly with PIFs to Control Plant Growth in Limiting Blue Light. (2016) Cell. 164(1-2):233-45. DOI: 10.1016/j.cell.2015.12.018

Brustolini, O.J.B., Machado, J.P.B., Condori-Apfata, J.A., Coco, D., Deguchi, M., Loriato, V.A.P., Pereira, W.A., Alfenas-Zerbini, P., Zerbini, F.M., Inoue-Nagata, A.K., Santos, A.A., Chory, J., Silva, F.F., Fontes, E.P.B. Sustained NIK-mediated antiviral signalling confers broad-spectrum tolerance to begomoviruses in cultivated plants. (2015) Plant Biotechnology Journal. 13(9):1300-1311. DOI: 10.1111/pbi.12349

Kaiserli, E., Páldi, K., O'Donnell, L., Batalov, O., Pedmale, U.V., Nusinow, D.A., Kay, S.A., Chory, J. Integration of Light and Photoperiodic Signaling in Transcriptional Nuclear Foci. (2015) Developmental Cell. 35(3):311-21. DOI: 10.1016/j.devcel.2015.10.008

Willige, B.C., Chory, J. A current perspective on the role of AGCVIII kinases in PIN-mediated apical hook development. (2015) Frontiers in Plant Science. 6:767. DOI: 10.3389/fpls.2015.00767

Woodson, J.D., Joens, M.S., Sinson, A.B., Gilkerson, J., Salomé, P.A., Weigel, D., Fitzpatrick, J.A., Chory, J. Ubiquitin facilitates a quality-control pathway that removes damaged chloroplasts. (2015) Science. 350(6259):450-4. DOI: 10.1126/science.aac7444

Yu, J., Qiu, H., Liu, X., Wang, M., Gao, Y., Chory, J., Tao, Y. Characterization of tub4(P287L) , a β-tubulin mutant, revealed new aspects of microtubule regulation in shade. (2015) Journal of Integrative Plant Biology. 57(9):757-69. DOI: 10.1111/jipb.12363

Wudick, M.M., Li, X., Valentini, V., Geldner, N., Chory, J., Lin, J., Maurel, C., Luu, D.T. Subcellular Redistribution of Root Aquaporins Induced by Hydrogen Peroxide. (2015) Molecular Plant. 8(7):1103-14. DOI: 10.1016/j.molp.2015.02.017

Zorzatto, C., Machado, J.P., Lopes, K.V., Nascimento, K.J., Pereira, W.A., Brustolini, O.J., Reis, P.A., Calil, I.P., Deguchi, M., Sachetto-Martins, G., Gouveia, B.C., Loriato, V.A., Silva, M.A., Silva, F.F., Santos, A.A., Chory, J., Fontes, E.P. NIK1-mediated translation suppression functions as a plant antiviral immunity mechanism. (2015) Nature. 520(7549):679-82. DOI: 10.1038/nature14171

Martins, S., Dohmann, E.M., Cayrel, A., Johnson, A., Fischer, W., Pojer, F., Satiat-Jeunemaître, B., Jaillais, Y., Chory, J., Geldner, N., Vert, G. Internalization and vacuolar targeting of the brassinosteroid hormone receptor BRI1 are regulated by ubiquitination. (2015) Nature Communications. 6:6151. DOI: 10.1038/ncomms7151

Belkhadir, Y., Yang, L., Hetzel, J., Dangl, J.L., Chory, J. The growth-defense pivot: crisis management in plants mediated by LRR-RK surface receptors. (2014) Trends in Biochemical Sciences. 39(10):447-56. DOI: 10.1016/j.tibs.2014.06.006

Li, L., Zhang, Q., Pedmale, U.V., Nito, K., Fu, W., Lin, L., Hazen, S.P., Chory, J. PIL1 participates in a negative feedback loop that regulates its own gene expression in response to shade. (2014) Molecular Plant. 7(10):1582-5. DOI: 10.1093/mp/ssu068

Chory, J. Interview with Joanne Chory. (2014) Trends in Biochemical Sciences. 39(10):435-6. DOI: 10.1016/j.tibs.2014.08.002

Krzymuski, M., Cerdán, P.D., Zhu, L., Vinh, A., Chory, J., Huq, E., Casal, J.J. Phytochrome A antagonizes PHYTOCHROME INTERACTING FACTOR 1 to prevent over-activation of photomorphogenesis. (2014) Molecular Plant. 7(9):1415-28. DOI: 10.1093/mp/ssu078

Procko, C., Crenshaw, C.M., Ljung, K., Noel, J.P., Chory, J. Cotyledon-Generated Auxin Is Required for Shade-Induced Hypocotyl Growth in Brassica rapa. (2014) Plant Physiology. 165(3):1285-1301. DOI: 10.1104/pp.114.241844

Zheng, Z., Germain, A.d.e.S., Chory, J. Unfolding the mysteries of strigolactone signaling. (2014) Molecular Plant. 7(6):934-6. DOI: 10.1093/mp/ssu021

Zhong, X., Du, J., Hale, C.J., Gallego-Bartolome, J., Feng, S., Vashisht, A.A., Chory, J., Wohlschlegel, J.A., Patel, D.J., Jacobsen, S.E. Molecular mechanism of action of plant DRM de novo DNA methyltransferases. (2014) Cell. 157(5):1050-60. DOI: 10.1016/j.cell.2014.03.056

Fitz Gerald, J.N., Carlson, A.L., Smith, E., Maloof, J.N., Weigel, D., Chory, J., Borevitz, J.O., Swanson, R.J. New Arabidopsis advanced intercross recombinant inbred lines reveal female control of nonrandom mating. (2014) Plant Physiology. 165(1):175-85. DOI: 10.1104/pp.113.233213

Simon, M.L., Platre, M.P., Assil, S., van Wijk, R., Chen, W.Y., Chory, J., Dreux, M., Munnik, T., Jaillais, Y. A multi-colour/multi-affinity marker set to visualize phosphoinositide dynamics in Arabidopsis. (2014) Plant Journal. 77(2):322-37. DOI: 10.1111/tpj.12358

Jung, H.S., Crisp, P.A., Estavillo, G.M., Cole, B., Hong, F., Mockler, T.C., Pogson, B.J., Chory, J. Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light. (2013) Proceedings of the National Academy of Sciences of the United States of America. 110(35):14474-9. DOI: 10.1073/pnas.1311632110

Nito, K., Wong, C.C., Yates, J.R., Chory, J. Tyrosine phosphorylation regulates the activity of phytochrome photoreceptors. (2013) Cell Reports. 3(6):1970-9. DOI: 10.1016/j.celrep.2013.05.006

Guo, Y., Zheng, Z., La Clair, J.J., Chory, J., Noel, J.P. Smoke-derived karrikin perception by the α/β-hydrolase KAI2 from Arabidopsis. (2013) Proceedings of the National Academy of Sciences of the United States of America. 110(20):8284-9. DOI: 10.1073/pnas.1306265110

Zhong, S.H., Liu, J.Z., Jin, H., Lin, L., Li, Q., Chen, Y., Yuan, Y.X., Wang, Z.Y., Huang, H., Qi, Y.J., Chen, X.Y., Vaucheret, H., Chory, J., Li, J., He, Z.H. Warm temperatures induce transgenerational epigenetic release of RNA silencing by inhibiting siRNA biogenesis in Arabidopsis. (2013) Proceedings of the National Academy of Sciences of the United States of America. 110(22):9171-6. DOI: 10.1073/pnas.1219655110

Zheng, Z., Guo, Y., Novák, O., Dai, X., Zhao, Y., Ljung, K., Noel, J.P., Chory, J. Coordination of auxin and ethylene biosynthesis by the aminotransferase VAS1. (2013) Nature Chemical Biology. 9(4):244-6. DOI: 10.1038/nchembio.1178

Shani, E., Weinstain, R., Zhang, Y., Castillejo, C., Kaiserli, E., Chory, J., Tsien, R.Y., Estelle, M. Gibberellins accumulate in the elongating endodermal cells of Arabidopsis root. (2013) Proceedings of the National Academy of Sciences of the United States of America. 110(12):4834-9. DOI: 10.1073/pnas.1300436110

Woodson, J.D., Perez-Ruiz, J.M., Schmitz, R.J., Ecker, J.R., Chory, J. Sigma factor-mediated plastid retrograde signals control nuclear gene expression. (2013) Plant Journal. 73(1):1-13. DOI: 10.1111/tpj.12011

Iñigo, S., Giraldez, A.N., Chory, J., Cerdán, P.D. Proteasome-mediated turnover of Arabidopsis MED25 is coupled to the activation of FLOWERING LOCUS T transcription. (2012) Plant Physiology. 160(3):1662-73. DOI: 10.1104/pp.112.205500

Woodson, J.D., Chory, J. Organelle signaling: how stressed chloroplasts communicate with the nucleus. (2012) Current Biology. 22(17):R690-2. DOI: 10.1016/j.cub.2012.07.028

Gilkerson, J., Perez-Ruiz, J.M., Chory, J., Callis, J. The plastid-localized pfkB-type carbohydrate kinases FRUCTOKINASE-LIKE 1 and 2 are essential for growth and development of Arabidopsis thaliana. (2012) BMC Plant Biology. 12:102. DOI: 10.1186/1471-2229-12-102

Lu, Y.J., Schornack, S., Spallek, T., Geldner, N., Chory, J., Schellmann, S., Schumacher, K., Kamoun, S., Robatzek, S. Patterns of plant subcellular responses to successful oomycete infections reveal differences in host cell reprogramming and endocytic trafficking. (2012) Cellular Microbiology. 14(5):682-97. DOI: 10.1111/j.1462-5822.2012.01751.x

Li, L., Ljung, K., Breton, G., Schmitz, R.J., Pruneda-Paz, J., Cowing-Zitron, C., Cole, B.J., Ivans, L.J., Pedmale, U.V., Jung, H.S., Ecker, J.R., Kay, S.A., Chory, J. Linking photoreceptor excitation to changes in plant architecture. (2012) Genes & Development. 26(8):785-90. DOI: 10.1101/gad.187849.112

Cole, B.J., Chory, J. Image-based analysis of light-grown seedling hypocotyls in Arabidopsis. (2012) Methods in Molecular Biology. 918:1-7. DOI: 10.1007/978-1-61779-995-2_1

Belkhadir, Y., Jaillais, Y., Epple, P., Balsemão-Pires, E., Dangl, J.L., Chory, J. Brassinosteroids modulate the efficiency of plant immune responses to microbe-associated molecular patterns. (2012) Proceedings of the National Academy of Sciences of the United States of America. 109(1):297-302. DOI: 10.1073/pnas.1112840108

Cuyvers, S., Dornez, E., Abou Hachem, M., Svensson, B., Hothorn, M., Chory, J., Delcour, J.A., Courtin, C.M. Isothermal titration calorimetry and surface plasmon resonance allow quantifying substrate binding to different binding sites of Bacillus subtilis xylanase. (2012) Analytical Biochemistry. 420(1):90-2. DOI: 10.1016/j.ab.2011.09.005

Vert, G., Chory, J. Crosstalk in cellular signaling: background noise or the real thing? (2011) Developmental Cell. 21(6):985-91. DOI: 10.1016/j.devcel.2011.11.006

Won, C., Shen, X., Mashiguchi, K., Zheng, Z., Dai, X., Cheng, Y., Kasahara, H., Kamiya, Y., Chory, J., Zhao, Y. Conversion of tryptophan to indole-3-acetic acid by TRYPTOPHAN AMINOTRANSFERASES OF ARABIDOPSIS and YUCCAs in Arabidopsis. (2011) Proceedings of the National Academy of Sciences of the United States of America. 108(45):18518-23. DOI: 10.1073/pnas.1108436108

Chen, M., Chory, J. Phytochrome signaling mechanisms and the control of plant development. (2011) Trends in Cell Biology. 21(11):664-71. DOI: 10.1016/j.tcb.2011.07.002

Hothorn, M., Dabi, T., Chory, J. Structural basis for cytokinin recognition by Arabidopsis thaliana histidine kinase 4. (2011) Nature Chemical Biology. 7(11):766-8. DOI: 10.1038/nchembio.667

Keller, M.M., Jaillais, Y., Pedmale, U.V., Moreno, J.E., Chory, J., Ballaré, C.L. Cryptochrome 1 and phytochrome B control shade-avoidance responses in Arabidopsis via partially independent hormonal cascades. (2011) Plant Journal. 67(2):195-207. DOI: 10.1111/j.1365-313X.2011.04598.x

Hothorn, M., Belkhadir, Y., Dreux, M., Dabi, T., Noel, J.P., Wilson, I.A., Chory, J. Structural basis of steroid hormone perception by the receptor kinase BRI1. (2011) Nature. 474(7352):467-71. DOI: 10.1038/nature10153

Filichkin, S.A., Breton, G., Priest, H.D., Dharmawardhana, P., Jaiswal, P., Fox, S.E., Michael, T.P., Chory, J., Kay, S.A., Mockler, T.C. Global profiling of rice and poplar transcriptomes highlights key conserved circadian-controlled pathways and cis-regulatory modules. (2011) PLOS One. 6(6):e16907. DOI: 10.1371/journal.pone.0016907

Balsemão-Pires, E., Jaillais, Y., Olson, B.J., Andrade, L.R., Umen, J.G., Chory, J., Sachetto-Martins, G. The Arabidopsis translocator protein (AtTSPO) is regulated at multiple levels in response to salt stress and perturbations in tetrapyrrole metabolism. (2011) BMC Plant Biology. 11:108. DOI: 10.1186/1471-2229-11-108

Woodson, J.D., Perez-Ruiz, J.M., Chory, J. Heme synthesis by plastid ferrochelatase I regulates nuclear gene expression in plants. (2011) Current Biology. 21(10):897-903. DOI: 10.1016/j.cub.2011.04.004

Wu, G., Wang, X., Li, X., Kamiya, Y., Otegui, M.S., Chory, J. Methylation of a phosphatase specifies dephosphorylation and degradation of activated brassinosteroid receptors. (2011) Science Signaling. 4(172):ra29. DOI: 10.1126/scisignal.2001258

Jaillais, Y., Belkhadir, Y., Balsemão-Pires, E., Dangl, J.L., Chory, J. Extracellular leucine-rich repeats as a platform for receptor/coreceptor complex formation. (2011) Proceedings of the National Academy of Sciences of the United States of America. 108(20):8503-7. DOI: 10.1073/pnas.1103556108

Cole, B., Kay, S.A., Chory, J. Automated analysis of hypocotyl growth dynamics during shade avoidance in Arabidopsis. (2011) Plant Journal. 65(6):991-1000. DOI: 10.1111/j.1365-313X.2010.04476.x

Hacham, Y., Holland, N., Butterfield, C., Ubeda-Tomas, S., Bennett, M.J., Chory, J., Savaldi-Goldstein, S. Brassinosteroid perception in the epidermis controls root meristem size. (2011) Development. 138(5):839-48. DOI: 10.1242/dev.061804

Skylar, A., Sung, F., Hong, F., Chory, J., Wu, X. Metabolic sugar signal promotes Arabidopsis meristematic proliferation via G2. (2011) Developmental Biology. 351(1):82-9. DOI: 10.1016/j.ydbio.2010.12.019

Jaillais, Y., Hothorn, M., Belkhadir, Y., Dabi, T., Nimchuk, Z.L., Meyerowitz, E.M., Chory, J. Tyrosine phosphorylation controls brassinosteroid receptor activation by triggering membrane release of its kinase inhibitor. (2011) Genes & Development. 25(3):232-7. DOI: 10.1101/gad.2001911

Chen, M., Galvão, R.M., Li, M., Burger, B., Bugea, J., Bolado, J., Chory, J. Arabidopsis HEMERA/pTAC12 initiates photomorphogenesis by phytochromes. (2010) Cell. 141(7):1230-40. DOI: 10.1016/j.cell.2010.05.007

Jaillais, Y., Chory, J. Unraveling the paradoxes of plant hormone signaling integration. (2010) Nature Structural & Molecular Biology. 17(6):642-5. DOI: 10.1038/nsmb0610-642

Isono, E., Katsiarimpa, A., Müller, I.K., Anzenberger, F., Stierhof, Y.D., Geldner, N., Chory, J., Schwechheimer, C. The deubiquitinating enzyme AMSH3 is required for intracellular trafficking and vacuole biogenesis in Arabidopsis thaliana. (2010) Plant Cell. 22(6):1826-37. DOI: 10.1105/tpc.110.075952

Todesco, M., Balasubramanian, S., Hu, T.T., Traw, M.B., Horton, M., Epple, P., Kuhns, C., Sureshkumar, S., Schwartz, C., Lanz, C., Laitinen, R.A., Huang, Y., Chory, J., Lipka, V., Borevitz, J.O., Dangl, J.L., Bergelson, J., Nordborg, M., Weigel, D. Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana. (2010) Nature. 465(7298):632-6. DOI: 10.1038/nature09083

Atwell, S., Huang, Y.S., Vilhjálmsson, B.J., Willems, G., Horton, M., Li, Y., Meng, D., Platt, A., Tarone, A.M., Hu, T.T., Jiang, R., Muliyati, N.W., Zhang, X., Amer, M.A., Baxter, I., Brachi, B., Chory, J., Dean, C., Debieu, M., de Meaux, J., Ecker, J.R., Faure, N., Kniskern, J.M., Jones, J.D., Michael, T., Nemri, A., Roux, F., Salt, D.E., Tang, C., Todesco, M., Traw, M.B., Weigel, D., Marjoram, P., Borevitz, J.O., Bergelson, J., Nordborg, M. Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. (2010) Nature. 465(7298):627-31. DOI: 10.1038/nature08800

Chory, J. Light signal transduction: an infinite spectrum of possibilities. (2010) Plant Journal. 61(6):982-91. DOI: 10.1111/j.1365-313X.2009.04105.x

Jung, H.S., Chory, J. Signaling between chloroplasts and the nucleus: can a systems biology approach bring clarity to a complex and highly regulated pathway? (2010) Plant Physiology. 152(2):453-9. DOI: 10.1104/pp.109.149070

Skylar, A., Hong, F., Chory, J., Weigel, D., Wu, X. STIMPY mediates cytokinin signaling during shoot meristem establishment in Arabidopsis seedlings. (2010) Development. 137(4):541-9. DOI: 10.1242/dev.041426

Nishimura, N., Sarkeshik, A., Nito, K., Park, S.Y., Wang, A., Carvalho, P.C., Lee, S., Caddell, D.F., Cutler, S.R., Chory, J., Yates, J.R., Schroeder, J.I. PYR/PYL/RCAR family members are major in-vivo ABI1 protein phosphatase 2C-interacting proteins in Arabidopsis. (2010) Plant Journal. 61(2):290-9. DOI: 10.1111/j.1365-313X.2009.04054.x

Ausin, I., Mockler, T.C., Chory, J., Jacobsen, S.E. IDN1 and IDN2 are required for de novo DNA methylation in Arabidopsis thaliana. (2009) Nature Structural & Molecular Biology. 16(12):1325-7. DOI: 10.1038/nsmb.1690

Schwartz, C., Balasubramanian, S., Warthmann, N., Michael, T.P., Lempe, J., Sureshkumar, S., Kobayashi, Y., Maloof, J.N., Borevitz, J.O., Chory, J., Weigel, D. Cis-regulatory changes at FLOWERING LOCUS T mediate natural variation in flowering responses of Arabidopsis thaliana. (2009) Genetics. 183(2):723-32, 1SI-7SI. DOI: 10.1534/genetics.109.104984

Pinheiro, H., Samalova, M., Geldner, N., Chory, J., Martinez, A., Moore, I. Genetic evidence that the higher plant Rab-D1 and Rab-D2 GTPases exhibit distinct but overlapping interactions in the early secretory pathway. (2009) Journal of Cell Science. 122(Pt 20):3749-58. DOI: 10.1242/jcs.050625

Vert, G., Chory, J. A toggle switch in plant nitrate uptake. (2009) Cell. 138(6):1064-6. DOI: 10.1016/j.cell.2009.09.005

Adhikari, N.D., Orler, R., Chory, J., Froehlich, J.E., Larkin, R.M. Porphyrins promote the association of GENOMES UNCOUPLED 4 and a Mg-chelatase subunit with chloroplast membranes. (2009) Journal of Biological Chemistry. 284(37):24783-96. DOI: 10.1074/jbc.M109.025205

Ibañes, M., Fàbregas, N., Chory, J., Caño-Delgado, A.I. Brassinosteroid signaling and auxin transport are required to establish the periodic pattern of Arabidopsis shoot vascular bundles. (2009) Proceedings of the National Academy of Sciences of the United States of America. 106(32):13630-5. DOI: 10.1073/pnas.0906416106

Geldner, N., Dénervaud-Tendon, V., Hyman, D.L., Mayer, U., Stierhof, Y.D., Chory, J. Rapid, combinatorial analysis of membrane compartments in intact plants with a multicolor marker set. (2009) Plant Journal. 59(1):169-78. DOI: 10.1111/j.1365-313X.2009.03851.x

Sellaro, R., Hoecker, U., Yanovsky, M., Chory, J., Casal, J.J. Synergism of red and blue light in the control of Arabidopsis gene expression and development. (2009) Current Biology. 19(14):1216-20. DOI: 10.1016/j.cub.2009.05.062

De Rybel, B., Audenaert, D., Vert, G., Rozhon, W., Mayerhofer, J., Peelman, F., Coutuer, S., Denayer, T., Jansen, L., Nguyen, L., Vanhoutte, I., Beemster, G.T., Vleminckx, K., Jonak, C., Chory, J., Inzé, D., Russinova, E., Beeckman, T. Chemical inhibition of a subset of Arabidopsis thaliana GSK3-like kinases activates brassinosteroid signaling. (2009) Chemistry & Biology. 16(6):594-604. DOI: 10.1016/j.chembiol.2009.04.008

Liljegren, S.J., Leslie, M.E., Darnielle, L., Lewis, M.W., Taylor, S.M., Luo, R., Geldner, N., Chory, J., Randazzo, P.A., Yanofsky, M.F., Ecker, J.R. Regulation of membrane trafficking and organ separation by the NEVERSHED ARF-GAP protein. (2009) Development. 136(11):1909-18. DOI: 10.1242/dev.033605

Pan, Y., Michael, T.P., Hudson, M.E., Kay, S.A., Chory, J., Schuler, M.A. Cytochrome P450 monooxygenases as reporters for circadian-regulated pathways. (2009) Plant Physiology. 150(2):858-78. DOI: 10.1104/pp.108.130757

Li, L., Yu, X., Thompson, A., Guo, M., Yoshida, S., Asami, T., Chory, J., Yin, Y. Arabidopsis MYB30 is a direct target of BES1 and cooperates with BES1 to regulate brassinosteroid-induced gene expression. (2009) Plant Journal. 58(2):275-86. DOI: 10.1111/j.1365-313X.2008.03778.x

Moreno, J.E., Tao, Y., Chory, J., Ballaré, C.L. Ecological modulation of plant defense via phytochrome control of jasmonate sensitivity. (2009) Proceedings of the National Academy of Sciences of the United States of America. 106(12):4935-40. DOI: 10.1073/pnas.0900701106

Balasubramanian, S., Schwartz, C., Singh, A., Warthmann, N., Kim, M.C., Maloof, J.N., Loudet, O., Trainer, G.T., Dabi, T., Borevitz, J.O., Chory, J., Weigel, D. QTL mapping in new Arabidopsis thaliana advanced intercross-recombinant inbred lines. (2009) PLOS One. 4(2):e4318. DOI: 10.1371/journal.pone.0004318

Dhonukshe, P., Tanaka, H., Goh, T., Ebine, K., Mähönen, A.P., Prasad, K., Blilou, I., Geldner, N., Xu, J., Uemura, T., Chory, J., Ueda, T., Nakano, A., Scheres, B., Friml, J. Generation of cell polarity in plants links endocytosis, auxin distribution and cell fate decisions. (2008) Nature. 456(7224):962-6. DOI: 10.1038/nature07409

Loudet, O., Michael, T.P., Burger, B.T., Le Metté, C., Mockler, T.C., Weigel, D., Chory, J. A zinc knuckle protein that negatively controls morning-specific growth in Arabidopsis thaliana. (2008) Proceedings of the National Academy of Sciences of the United States of America. 105(44):17193-8. DOI: 10.1073/pnas.0807264105

Savaldi-Goldstein, S., Baiga, T.J., Pojer, F., Dabi, T., Butterfield, C., Parry, G., Santner, A., Dharmasiri, N., Tao, Y., Estelle, M., Noel, J.P., Chory, J. New auxin analogs with growth-promoting effects in intact plants reveal a chemical strategy to improve hormone delivery. (2008) Proceedings of the National Academy of Sciences of the United States of America. 105(39):15190-5. DOI: 10.1073/pnas.0806324105

Michael, T.P., Breton, G., Hazen, S.P., Priest, H., Mockler, T.C., Kay, S.A., Chory, J. A morning-specific phytohormone gene expression program underlying rhythmic plant growth. (2008) PLOS Biology. 6(9):e225. DOI: 10.1371/journal.pbio.0060225

Leung, D.W., Otomo, C., Chory, J., Rosen, M.K. Genetically encoded photoswitching of actin assembly through the Cdc42-WASP-Arp2/3 complex pathway. (2008) Proceedings of the National Academy of Sciences of the United States of America. 105(35):12797-802. DOI: 10.1073/pnas.0801232105

Vert, G., Walcher, C.L., Chory, J., Nemhauser, J.L. Integration of auxin and brassinosteroid pathways by Auxin Response Factor 2. (2008) Proceedings of the National Academy of Sciences of the United States of America. 105(28):9829-34. DOI: 10.1073/pnas.0803996105

Jones, A.M., Chory, J., Dangl, J.L., Estelle, M., Jacobsen, S.E., Meyerowitz, E.M., Nordborg, M., Weigel, D. The impact of Arabidopsis on human health: diversifying our portfolio. (2008) Cell. 133(6):939-43. DOI: 10.1016/j.cell.2008.05.040

Woodson, J.D., Chory, J. Coordination of gene expression between organellar and nuclear genomes. (2008) Nature Reviews Genetics. 9(5):383-95. DOI: 10.1038/nrg2348

Yu, X., Li, L., Li, L., Guo, M., Chory, J., Yin, Y. Modulation of brassinosteroid-regulated gene expression by Jumonji domain-containing proteins ELF6 and REF6 in Arabidopsis. (2008) Proceedings of the National Academy of Sciences of the United States of America. 105(21):7618-23. DOI: 10.1073/pnas.0802254105

Tao, Y., Ferrer, J.L., Ljung, K., Pojer, F., Hong, F., Long, J.A., Li, L., Moreno, J.E., Bowman, M.E., Ivans, L.J., Cheng, Y., Lim, J., Zhao, Y., Ballaré, C.L., Sandberg, G., Noel, J.P., Chory, J. Rapid synthesis of auxin via a new tryptophan-dependent pathway is required for shade avoidance in plants. (2008) Cell. 133(1):164-76. DOI: 10.1016/j.cell.2008.01.049

Michael, T.P., Mockler, T.C., Breton, G., McEntee, C., Byer, A., Trout, J.D., Hazen, S.P., Shen, R., Priest, H.D., Sullivan, C.M., Givan, S.A., Yanovsky, M., Hong, F., Kay, S.A., Chory, J. Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules. (2008) PLOS Genetics. 4(2):e14. DOI: 10.1371/journal.pgen.0040014

Savaldi-Goldstein, S., Chory, J. Growth coordination and the shoot epidermis. (2008) Current Opinion in Plant Biology. 11(1):42-8. DOI: 10.1016/j.pbi.2007.10.009

Filiault, D.L., Wessinger, C.A., Dinneny, J.R., Lutes, J., Borevitz, J.O., Weigel, D., Chory, J., Maloof, J.N. Amino acid polymorphisms in Arabidopsis phytochrome B cause differential responses to light. (2008) Proceedings of the National Academy of Sciences of the United States of America. 105(8):3157-62. DOI: 10.1073/pnas.0712174105

Panikashvili, D., Savaldi-Goldstein, S., Mandel, T., Yifhar, T., Franke, R.B., Höfer, R., Schreiber, L., Chory, J., Aharoni, A. The Arabidopsis DESPERADO/AtWBC11 transporter is required for cutin and wax secretion. (2007) Plant Physiology. 145(4):1345-60. DOI: 10.1104/pp.107.105676

Breuer, C., Stacey, N.J., West, C.E., Zhao, Y., Chory, J., Tsukaya, H., Azumi, Y., Maxwell, A., Roberts, K., Sugimoto-Shirasu, K. BIN4, a novel component of the plant DNA topoisomerase VI complex, is required for endoreduplication in Arabidopsis. (2007) Plant Cell. 19(11):3655-68. DOI: 10.1105/tpc.107.054833

Wu, X., Chory, J., Weigel, D. Combinations of WOX activities regulate tissue proliferation during Arabidopsis embryonic development. (2007) Developmental Biology. 309(2):306-16. DOI: 10.1016/j.ydbio.2007.07.019

Michael, T.P., Park, S., Kim, T.S., Booth, J., Byer, A., Sun, Q., Chory, J., Lee, K. Simple sequence repeats provide a substrate for phenotypic variation in the Neurospora crassa circadian clock. (2007) PLOS One. 2(8):e795. DOI: 10.1371/journal.pone.0000795

Borevitz, J.O., Hazen, S.P., Michael, T.P., Morris, G.P., Baxter, I.R., Hu, T.T., Chen, H., Werner, J.D., Nordborg, M., Salt, D.E., Kay, S.A., Chory, J., Weigel, D., Jones, J.D., Ecker, J.R. Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana. (2007) Proceedings of the National Academy of Sciences of the United States of America. 104(29):12057-62. DOI: 10.1073/pnas.0705323104

Geldner, N., Hyman, D.L., Wang, X., Schumacher, K., Chory, J. Endosomal signaling of plant steroid receptor kinase BRI1. (2007) Genes & Development. 21(13):1598-602. DOI: 10.1101/gad.1561307

Koussevitzky, S., Nott, A., Mockler, T.C., Hong, F., Sachetto-Martins, G., Surpin, M., Lim, J., Mittler, R., Chory, J. Signals from chloroplasts converge to regulate nuclear gene expression. (2007) Science. 316(5825):715-9. DOI: 10.1126/science. 1140516

Holton, N., Caño-Delgado, A., Harrison, K., Montoya, T., Chory, J., Bishop, G.J. Tomato BRASSINOSTEROID INSENSITIVE1 is required for systemin-induced root elongation in Solanum pimpinellifolium but is not essential for wound signaling. (2007) Plant Cell. 19(5):1709-17. DOI: 10.1105/tpc.106.047795

Savaldi-Goldstein, S., Peto, C., Chory, J. The epidermis both drives and restricts plant shoot growth. (2007) Nature. 446(7132):199-202. DOI: 10.1038/nature05618

Koussevitzky, S., Stanne, T.M., Peto, C.A., Giap, T., Sjögren, L.L., Zhao, Y., Clarke, A.K., Chory, J. An Arabidopsis thaliana virescent mutant reveals a role for ClpR1 in plastid development. (2007) Plant Molecular Biology. 63(1):85-96. DOI: 10.1007/s11103-006-9074-2

Mockler, T.C., Michael, T.P., Priest, H.D., Shen, R., Sullivan, C.M., Givan, S.A., McEntee, C., Kay, S.A., Chory, J. The DIURNAL project: DIURNAL and circadian expression profiling, model-based pattern matching, and promoter analysis. (2007) Cold Spring Harbor Symposia on Quantitative Biology. 72:353-63. DOI: 10.1101/sqb.2007.72.006

Belkhadir, Y., Wang, X., Chory, J. Arabidopsis brassinosteroid signaling pathway. (2006) Sci. STKE. 2006(364):cm5. DOI: 10.1126/stke.3642006cm5

Belkhadir, Y., Wang, X., Chory, J. Brassinosteroid signaling pathway. (2006) Sci. STKE. 2006(364):cm4. DOI: 10.1126/stke.3642006cm4

Belkhadir, Y., Chory, J. Brassinosteroid signaling: a paradigm for steroid hormone signaling from the cell surface. (2006) Science. 314(5804):1410-1. DOI: 10.1126/science.1134040

Hong, F., Breitling, R., McEntee, C.W., Wittner, B.S., Nemhauser, J.L., Chory, J. RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis. (2006) Bioinformatics. 22(22):2825-7. DOI: 10.1093/bioinformatics/btl476

Nemhauser, J.L., Hong, F., Chory, J. Different plant hormones regulate similar processes through largely nonoverlapping transcriptional responses. (2006) Cell. 126(3):467-75. DOI: 10.1016/j.cell.2006.05.050

Wang, X., Chory, J. Brassinosteroids regulate dissociation of BKI1, a negative regulator of BRI1 signaling, from the plasma membrane. (2006) Science. 313(5790):1118-22. DOI: 10.1126/science.1127593

Balasubramanian, S., Sureshkumar, S., Agrawal, M., Michael, T.P., Wessinger, C., Maloof, J.N., Clark, R., Warthmann, N., Chory, J., Weigel, D. The PHYTOCHROME C photoreceptor gene mediates natural variation in flowering and growth responses of Arabidopsis thaliana. (2006) Nature Genetics. 38(6):711-5. DOI: 10.1038/ng1818

Vert, G., Chory, J. Downstream nuclear events in brassinosteroid signalling. (2006) Nature. 441(7089):96-100. DOI: 10.1038/nature04681

Nott, A., Jung, H.S., Koussevitzky, S., Chory, J. Plastid-to-nucleus retrograde signaling. (2006) Annual Review of Plant Biology. 57:739-59. DOI: 10.1146/annurev.arplant.57.032905.105310

Verdecia, M.A., Larkin, R.M., Ferrer, J.L., Riek, R., Chory, J., Noel, J.P. [Structure of the Mg-chelatase cofactor GUN4 reveals a novel hand-shaped fold for porphyrin binding]. (2005) Medecine Sciences (Paris). 21(11):903-4. DOI: 10.1051/medsci/20052111903

Yin, Y., Chory, J., Baulcombe, D. RNAi in transgenic plants. (2005) Current Protocols in Molecular Biology. Chapter 26:Unit 26.6. DOI: 10.1002/0471142727.mb2606s72

Fan, J., Quan, S., Orth, T., Awai, C., Chory, J., Hu, J. The Arabidopsis PEX12 gene is required for peroxisome biogenesis and is essential for development. (2005) Plant Physiology. 139(1):231-9. DOI: 10.1104/pp.105.066811

Mazzella, M.A., Arana, M.V., Staneloni, R.J., Perelman, S., Rodriguez Batiller, M.J., Muschietti, J., Cerdán, P.D., Chen, K., Sánchez, R.A., Zhu, T., Chory, J., Casal, J.J. Phytochrome control of the Arabidopsis transcriptome anticipates seedling exposure to light. (2005) Plant Cell. 17(9):2507-16. DOI: 10.1105/tpc.105.034322

Nemhauser, J.L., Chory, J. A new FronTIR in targeted protein degradation and plant development. (2005) Cell. 121(7):970-2. DOI: 10.1016/j.cell.2005.06.020

Werner, J.D., Borevitz, J.O., Uhlenhaut, N.H., Ecker, J.R., Chory, J., Weigel, D. FRIGIDA-independent variation in flowering time of natural Arabidopsis thaliana accessions. (2005) Genetics. 170(3):1197-207. DOI: 10.1534/genetics.104.036533

Wang, X., Li, X., Meisenhelder, J., Hunter, T., Yoshida, S., Asami, T., Chory, J. Autoregulation and homodimerization are involved in the activation of the plant steroid receptor BRI1. (2005) Developmental Cell. 8(6):855-65. DOI: 10.1016/j.devcel.2005.05.001

Verdecia, M.A., Larkin, R.M., Ferrer, J.L., Riek, R., Chory, J., Noel, J.P. Structure of the Mg-chelatase cofactor GUN4 reveals a novel hand-shaped fold for porphyrin binding. (2005) PLOS Biology. 3(5):e151. DOI: 10.1371/journal.pbio.0030151

Chen, M., Tao, Y., Lim, J., Shaw, A., Chory, J. Regulation of phytochrome B nuclear localization through light-dependent unmasking of nuclear-localization signals. (2005) Current Biology. 15(7):637-42. DOI: 10.1016/j.cub.2005.02.028

Werner, J.D., Borevitz, J.O., Warthmann, N., Trainer, G.T., Ecker, J.R., Chory, J., Weigel, D. Quantitative trait locus mapping and DNA array hybridization identify an FLM deletion as a cause for natural flowering-time variation. (2005) Proceedings of the National Academy of Sciences of the United States of America. 102(7):2460-5. DOI: 10.1073/pnas.0409474102

Vert, G., Nemhauser, J.L., Geldner, N., Hong, F., Chory, J. Molecular mechanisms of steroid hormone signaling in plants. (2005) Annual Review of Cell and Developmental Biology. 21:177-201. DOI: 10.1146/annurev.cellbio.21.090704.151241

Yin, Y., Vafeados, D., Tao, Y., Yoshida, S., Asami, T., Chory, J. A new class of transcription factors mediates brassinosteroid-regulated gene expression in Arabidopsis. (2005) Cell. 120(2):249-59. DOI: 10.1016/j.cell.2004.11.044

Kinoshita, T., Caño-Delgado, A., Seto, H., Hiranuma, S., Fujioka, S., Yoshida, S., Chory, J. Binding of brassinosteroids to the extracellular domain of plant receptor kinase BRI1. (2005) Nature. 433(7022):167-71. DOI: 10.1038/nature03227

Russinova, E., Borst, J.W., Kwaaitaal, M., Caño-Delgado, A., Yin, Y., Chory, J., de Vries, S.C. Heterodimerization and endocytosis of Arabidopsis brassinosteroid receptors BRI1 and AtSERK3 (BAK1). (2004) Plant Cell. 16(12):3216-29. DOI: 10.1105/tpc.104.025387

Caño-Delgado, A., Yin, Y., Yu, C., Vafeados, D., Mora-García, S., Cheng, J.C., Nam, K.H., Li, J., Chory, J. BRL1 and BRL3 are novel brassinosteroid receptors that function in vascular differentiation in Arabidopsis. (2004) Development. 131(21):5341-51. DOI: 10.1242/dev.01403

Fontes, E.P., Santos, A.A., Luz, D.F., Waclawovsky, A.J., Chory, J. The geminivirus nuclear shuttle protein is a virulence factor that suppresses transmembrane receptor kinase activity. (2004) Genes & Development. 18(20):2545-56. DOI: 10.1101/gad.1245904

Nemhauser, J.L., Mockler, T.C., Chory, J. Interdependency of brassinosteroid and auxin signaling in Arabidopsis. (2004) PLOS Biology. 2(9):E258. DOI: 10.1371/journal.pbio.0020258

Mockler, T.C., Yu, X., Shalitin, D., Parikh, D., Michael, T.P., Liou, J., Huang, J., Smith, Z., Alonso, J.M., Ecker, J.R., Chory, J., Lin, C. Regulation of flowering time in Arabidopsis by K homology domain proteins. (2004) Proceedings of the National Academy of Sciences of the United States of America. 101(34):12759-64. DOI: 10.1073/pnas.0404552101

Wolyn, D.J., Borevitz, J.O., Loudet, O., Schwartz, C., Maloof, J., Ecker, J.R., Berry, C.C., Chory, J. Light-response quantitative trait loci identified with composite interval and eXtreme array mapping in Arabidopsis thaliana. (2004) Genetics. 167(2):907-17. DOI: 10.1534/genetics.103.024810

Borevitz, J.O., Chory, J. Genomics tools for QTL analysis and gene discovery. (2004) Current Opinion in Plant Biology. 7(2):132-6. DOI: 10.1016/j.pbi.2004.01.011

Mora-García, S., Vert, G., Yin, Y., Caño-Delgado, A., Cheong, H., Chory, J. Nuclear protein phosphatases with Kelch-repeat domains modulate the response to brassinosteroids in Arabidopsis. (2004) Genes & Development. 18(4):448-60. DOI: 10.1101/gad.1174204

Chen, M., Chory, J., Fankhauser, C. Light signal transduction in higher plants. (2004) Annual Review of Genetics. 38:87-117. DOI: 10.1146/annurev.genet.38.072902.092259

Nemhauser, J.L., Chory, J. BRing it on: new insights into the mechanism of brassinosteroid action. (2004) J. Exp. Bot. 55(395):265-70. DOI: 10.1093/jxb/erh024

Maxwell, B.B., Andersson, C.R., Poole, D.S., Kay, S.A., Chory, J. HY5, Circadian Clock-Associated 1, and a cis-element, DET1 dark response element, mediate DET1 regulation of chlorophyll a/b-binding protein 2 expression. (2003) Plant Physiology. 133(4):1565-77. DOI: 10.1104/pp.103.025114

Lariguet, P., Boccalandro, H.E., Alonso, J.M., Ecker, J.R., Chory, J., Casal, J.J., Fankhauser, C. A growth regulatory loop that provides homeostasis to phytochrome a signaling. (2003) Plant Cell. 15(12):2966-78. DOI: 10.1105/tpc.014563

Chen, M., Schwab, R., Chory, J. Characterization of the requirements for localization of phytochrome B to nuclear bodies. (2003) Proceedings of the National Academy of Sciences of the United States of America. 100(24):14493-8. DOI: 10.1073/pnas.1935989100

Nomura, T., Bishop, G.J., Kaneta, T., Reid, J.B., Chory, J., Yokota, T. The LKA gene is a BRASSINOSTEROID INSENSITIVE 1 homolog of pea. (2003) Plant Journal. 36(3):291-300.

Zhao, Y., Dai, X., Blackwell, H.E., Schreiber, S.L., Chory, J. SIR1, an upstream component in auxin signaling identified by chemical genetics. (2003) Science. 301(5636):1107-10. DOI: 10.1126/science.1084161

Cerdán, P.D., Chory, J. Regulation of flowering time by light quality. (2003) Nature. 423(6942):881-5. DOI: 10.1038/nature01636

Nemhauser, J.L., Maloof, J.N., Chory, J. Building integrated models of plant growth and development. (2003) Plant Physiology. 132(2):436-9. DOI: 10.1104/pp.102.017061

Borevitz, J.O., Liang, D., Plouffe, D., Chang, H.S., Zhu, T., Weigel, D., Berry, C.C., Winzeler, E., Chory, J. Large-scale identification of single-feature polymorphisms in complex genomes. (2003) Genome Research. 13(3):513-23. DOI: 10.1101/gr.541303

Larkin, R.M., Alonso, J.M., Ecker, J.R., Chory, J. GUN4, a regulator of chlorophyll synthesis and intracellular signaling. (2003) Science. 299(5608):902-6. DOI: 10.1126/science.1079978

Strand, A., Asami, T., Alonso, J., Ecker, J.R., Chory, J. Chloroplast to nucleus communication triggered by accumulation of Mg-protoporphyrinIX. (2003) Nature. 421(6918):79-83. DOI: 10.1038/nature01204

Staiger, D., Allenbach, L., Salathia, N., Fiechter, V., Davis, S.J., Millar, A.J., Chory, J., Fankhauser, C. The Arabidopsis SRR1 gene mediates phyB signaling and is required for normal circadian clock function. (2003) Genes & Development. 17(2):256-68. DOI: 10.1101/gad.244103

Zhao, Y., Hull, A.K., Gupta, N.R., Goss, K.A., Alonso, J., Ecker, J.R., Normanly, J., Chory, J., Celenza, J.L. Trp-dependent auxin biosynthesis in Arabidopsis: involvement of cytochrome P450s CYP79B2 and CYP79B3. (2002) Genes & Development. 16(23):3100-12. DOI: 10.1101/gad.1035402

Beachy, R., Bennetzen, J.L., Chassy, B.M., Chrispeels, M., Chory, J., Ecker, J.R., Noel, J.P., Kay, S.A., Dean, C., Lamb, C., Jones, J., Santerre, C.R., Schroeder, J.I., Umen, J., Yanofsky, M., Wessler, S., Zhao, Y., Parrott, W. Divergent perspectives on GM food. (2002) Nature Biotechnology. 20(12):1195-6; author reply 1197. DOI: 10.1038/nbt1202-1195

Thummel, C.S., Chory, J. Steroid signaling in plants and insects--common themes, different pathways. (2002) Genes & Development. 16(24):3113-29. DOI: 10.1101/gad.1042102

Friedrichsen, D.M., Nemhauser, J., Muramitsu, T., Maloof, J.N., Alonso, J., Ecker, J.R., Furuya, M., Chory, J. Three redundant brassinosteroid early response genes encode putative bHLH transcription factors required for normal growth. (2002) Genetics. 162(3):1445-56.

Schroeder, D.F., Gahrtz, M., Maxwell, B.B., Cook, R.K., Kan, J.M., Alonso, J.M., Ecker, J.R., Chory, J. De-etiolated 1 and damaged DNA binding protein 1 interact to regulate Arabidopsis photomorphogenesis. (2002) Current Biology. 12(17):1462-72.

Moore, D., Dowhan, D., Chory, J., Ribaudo, R.K. Isolation and purification of large DNA restriction fragments from agarose gels. (2002) Current Protocols in Molecular Biology. Chapter 2:Unit 2.6. DOI: 10.1002/0471142727.mb0206s59

Nemhauser, J., Chory, J. Photomorphogenesis. (2002) Arabidopsis Book. 1:e0054. DOI: 10.1199/tab.0054

Hu, J., Aguirre, M., Peto, C., Alonso, J., Ecker, J., Chory, J. A role for peroxisomes in photomorphogenesis and development of Arabidopsis. (2002) Science. 297(5580):405-9. DOI: 10.1126/science.1073633

Yin, Y., Cheong, H., Friedrichsen, D., Zhao, Y., Hu, J., Mora-Garcia, S., Chory, J. A crucial role for the putative Arabidopsis topoisomerase VI in plant growth and development. (2002) Proceedings of the National Academy of Sciences of the United States of America. 99(15):10191-6. DOI: 10.1073/pnas.152337599

Yin, Y., Wu, D., Chory, J. Plant receptor kinases: systemin receptor identified. (2002) Proceedings of the National Academy of Sciences of the United States of America. 99(14):9090-2. DOI: 10.1073/pnas.152330799

Yin, Y., Wang, Z.Y., Mora-Garcia, S., Li, J., Yoshida, S., Asami, T., Chory, J. BES1 accumulates in the nucleus in response to brassinosteroids to regulate gene expression and promote stem elongation. (2002) Cell. 109(2):181-91.

Wang, Z.Y., Nakano, T., Gendron, J., He, J., Chen, M., Vafeados, D., Yang, Y., Fujioka, S., Yoshida, S., Asami, T., Chory, J. Nuclear-localized BZR1 mediates brassinosteroid-induced growth and feedback suppression of brassinosteroid biosynthesis. (2002) Developmental Cell. 2(4):505-13.

Borevitz, J.O., Maloof, J.N., Lutes, J., Dabi, T., Redfern, J.L., Trainer, G.T., Werner, J.D., Asami, T., Berry, C.C., Weigel, D., Chory, J. Quantitative trait loci controlling light and hormone response in two accessions of Arabidopsis thaliana. (2002) Genetics. 160(2):683-96.

Nordborg, M., Borevitz, J.O., Bergelson, J., Berry, C.C., Chory, J., Hagenblad, J., Kreitman, M., Maloof, J.N., Noyes, T., Oefner, P.J., Stahl, E.A., Weigel, D. The extent of linkage disequilibrium in Arabidopsis thaliana. (2002) Nature Genetics. 30(2):190-3. DOI: 10.1038/ng813

Surpin, M., Larkin, R.M., Chory, J. Signal transduction between the chloroplast and the nucleus. (2002) Plant Cell. 14 Suppl:S327-38.

Maloof, J.N., Borevitz, J.O., Dabi, T., Lutes, J., Nehring, R.B., Redfern, J.L., Trainer, G.T., Wilson, J.M., Asami, T., Berry, C.C., Weigel, D., Chory, J. Natural variation in light sensitivity of Arabidopsis. (2001) Nature Genetics. 29(4):441-6. DOI: 10.1038/ng777

Friedrichsen, D., Chory, J. Steroid signaling in plants: from the cell surface to the nucleus. (2001) BioEssays. 23(11):1028-36. DOI: 10.1002/bies.1148

Luan, S., Kudla, J., Harter, K., Gruissem, W., Chory, J. Renaming genes and duplication of gene names in the literature. (2001) Plant Cell. 13(11):2391-2.

Zhao, Y., Chory, J. A link between the light and gibberellin signaling cascades. (2001) Developmental Cell. 1(3):315-6.

Li, J., Nam, K.H., Vafeados, D., Chory, J. BIN2, a new brassinosteroid-insensitive locus in Arabidopsis. (2001) Plant Physiology. 127(1):14-22.

Gil, P., Dewey, E., Friml, J., Zhao, Y., Snowden, K.C., Putterill, J., Palme, K., Estelle, M., Chory, J. BIG: a calossin-like protein required for polar auxin transport in Arabidopsis. (2001) Genes & Development. 15(15):1985-97. DOI: 10.1101/gad.905201

Liu, X.L., Covington, M.F., Fankhauser, C., Chory, J., Wagner, D.R. ELF3 encodes a circadian clock-regulated nuclear protein that functions in an Arabidopsis PHYB signal transduction pathway. (2001) Plant Cell. 13(6):1293-304.

Chory, J., Pollard, J.D. Separation of small DNA fragments by conventional gel electrophoresis. (2001) Current Protocols in Molecular Biology. Chapter 2:Unit 2.7. DOI: 10.1002/0471142727.mb0207s47

Ellington, A., Chory, J. Deprotection of oligonucleotides and purification using denaturing PAGE. (2001) Curr Protoc Immunol. Chapter 10:Unit 10.7. DOI: 10.1002/0471142735.im1007s06

Moore, D., Chory, J., Ribaudo, R.K. Isolation and purification of large DNA restriction fragments from agarose gels. (2001) Curr Protoc Immunol. Chapter 10:Unit 10.5. DOI: 10.1002/0471142735.im1005s08

Wang, Z.Y., Seto, H., Fujioka, S., Yoshida, S., Chory, J. BRI1 is a critical component of a plasma-membrane receptor for plant steroids. (2001) Nature. 410(6826):380-3. DOI: 10.1038/35066597

Mochizuki, N., Brusslan, J.A., Larkin, R., Nagatani, A., Chory, J. Arabidopsis genomes uncoupled 5 (GUN5) mutant reveals the involvement of Mg-chelatase H subunit in plastid-to-nucleus signal transduction. (2001) Proceedings of the National Academy of Sciences of the United States of America. 98(4):2053-8. DOI: 10.1073/pnas.98.4.2053

Zhao, Y., Christensen, S.K., Fankhauser, C., Cashman, J.R., Cohen, J.D., Weigel, D., Chory, J. A role for flavin monooxygenase-like enzymes in auxin biosynthesis. (2001) Science. 291(5502):306-9. DOI: 10.1126/science.291.5502.306

Chory, J., Wu, D. Weaving the complex web of signal transduction. (2001) Plant Physiology. 125(1):77-80.

Maloof, J.N., Borevitz, J.O., Weigel, D., Chory, J. Natural variation in phytochrome signaling. (2000) Seminars in Cell & Developmental Biology. 11(6):523-30. DOI: 10.1006/scdb.2000.0198

Spiegelman, J.I., Mindrinos, M.N., Fankhauser, C., Richards, D., Lutes, J., Chory, J., Oefner, P.J. Cloning of the Arabidopsis RSF1 gene by using a mapping strategy based on high-density DNA arrays and denaturing high-performance liquid chromatography. (2000) Plant Cell. 12(12):2485-2498.

Vinti, G., Hills, A., Campbell, S., Bowyer, J.R., Mochizuki, N., Chory, J., López-Juez, E. Interactions between hy1 and gun mutants of Arabidopsis, and their implications for plastid/nuclear signalling. (2000) Plant Journal. 24(6):883-94.

McCarty, D.R., Chory, J. Conservation and innovation in plant signaling pathways. (2000) Cell. 103(2):201-9.

Genick, U.K., Chory, J. Red light sensing in plants. (2000) Current Biology. 10(18):R651-4. DOI: https://doi.org/10.1016/S0960-9822(00)00694-1

Allen, G.J., Chu, S.P., Schumacher, K., Shimazaki, C.T., Vafeados, D., Kemper, A., Hawke, S.D., Tallman, G., Tsien, R.Y., Harper, J.F., Chory, J., Schroeder, J.I. Alteration of stimulus-specific guard cell calcium oscillations and stomatal closing in Arabidopsis det3 mutant. (2000) Science. 289(5488):2338-42.

Fankhauser, C., Chory, J. RSF1, an Arabidopsis locus implicated in phytochrome A signaling. (2000) Plant Physiology. 124(1):39-45.

Friedrichsen, D.M., Joazeiro, C.A., Li, J., Hunter, T., Chory, J. Brassinosteroid-insensitive-1 is a ubiquitously expressed leucine-rich repeat receptor serine/threonine kinase. (2000) Plant Physiology. 123(4):1247-56.

Jarvis, P., Dörmann, P., Peto, C.A., Lutes, J., Benning, C., Chory, J. Galactolipid deficiency and abnormal chloroplast development in the Arabidopsis MGD synthase 1 mutant. (2000) Proceedings of the National Academy of Sciences of the United States of America. 97(14):8175-9. DOI: 10.1073/pnas.100132197

He, Z., Wang, Z.Y., Li, J., Zhu, Q., Lamb, C., Ronald, P., Chory, J. Perception of brassinosteroids by the extracellular domain of the receptor kinase BRI1. (2000) Science. 288(5475):2360-3.

Chory, J., Ecker, J.R., Briggs, S., Caboche, M., Coruzzi, G.M., Cook, D., Dangl, J., Grant, S., Guerinot, M.L., Henikoff, S., Martienssen, R., Okada, K., Raikhel, N.V., Somerville, C.R., Weigel, D. National Science Foundation-Sponsored Workshop Report: "The 2010 Project" functional genomics and the virtual plant. A blueprint for understanding how plants are built and how to improve them. (2000) Plant Physiology. 123(2):423-6.

Willows, R.D., Mayer, S.M., Foulk, M.S., DeLong, A., Hanson, K., Chory, J., Beale, S.I. Phytobilin biosynthesis: the Synechocystis sp. PCC 6803 heme oxygenase-encoding ho1 gene complements a phytochrome-deficient Arabidopsis thalianna hy1 mutant. (2000) Plant Molecular Biology. 43(1):113-20.

Weigel, D., Ahn, J.H., Blázquez, M.A., Borevitz, J.O., Christensen, S.K., Fankhauser, C., Ferrándiz, C., Kardailsky, I., Malancharuvil, E.J., Neff, M.M., Nguyen, J.T., Sato, S., Wang, Z.Y., Xia, Y., Dixon, R.A., Harrison, M.J., Lamb, C.J., Yanofsky, M.F., Chory, J. Activation tagging in Arabidopsis. (2000) Plant Physiology. 122(4):1003-13.

Christensen, S.K., Dagenais, N., Chory, J., Weigel, D. Regulation of auxin response by the protein kinase PINOID. (2000) Cell. 100(4):469-78.

Schumacher, K., Chory, J. Brassinosteroid signal transduction: still casting the actors. (2000) Current Opinion in Plant Biology. 3(1):79-84.

Neff, M.M., Fankhauser, C., Chory, J. Light: an indicator of time and place. (2000) Genes & Development. 14(3):257-71.

Schumacher, K., Vafeados, D., McCarthy, M., Sze, H., Wilkins, T., Chory, J. The Arabidopsis det3 mutant reveals a central role for the vacuolar H(+)-ATPase in plant growth and development. (1999) Genes & Development. 13(24):3259-70.

Neff, M.M., Nguyen, S.M., Malancharuvil, E.J., Fujioka, S., Noguchi, T., Seto, H., Tsubuki, M., Honda, T., Takatsuto, S., Yoshida, S., Chory, J. BAS1: A gene regulating brassinosteroid levels and light responsiveness in Arabidopsis. (1999) Proceedings of the National Academy of Sciences of the United States of America. 96(26):15316-23.

Kardailsky, I., Shukla, V.K., Ahn, J.H., Dagenais, N., Christensen, S.K., Nguyen, J.T., Chory, J., Harrison, M.J., Weigel, D. Activation tagging of the floral inducer FT. (1999) Science. 286(5446):1962-5.

Streatfield, S.J., Weber, A., Kinsman, E.A., Häusler, R.E., Li, J., Post-Beittenmiller, D., Kaiser, W.M., Pyke, K.A., Flügge, U.I., Chory, J. The phosphoenolpyruvate/phosphate translocator is required for phenolic metabolism, palisade cell development, and plastid-dependent nuclear gene expression. (1999) Plant Cell. 11(9):1609-22.

Noguchi, T., Fujioka, S., Takatsuto, S., Sakurai, A., Yoshida, S., Li, J., Chory, J. Arabidopsis det2 is defective in the conversion of (24R)-24-methylcholest-4-En-3-one to (24R)-24-methyl-5alpha-cholestan-3-one in brassinosteroid biosynthesis. (1999) Plant Physiology. 120(3):833-40.

Fankhauser, C., Yeh, K.C., Lagarias, J.C., Zhang, H., Elich, T.D., Chory, J. PKS1, a substrate phosphorylated by phytochrome that modulates light signaling in Arabidopsis. (1999) Science. 284(5419):1539-41.

Fankhauser, C., Chory, J. Light receptor kinases in plants! (1999) Current Biology. 9(4):R123-6.

López-Juez, E., Jarvis, R.P., Takeuchi, A., Page, A.M., Chory, J. New Arabidopsis cue mutants suggest a close connection between plastid- and phytochrome regulation of nuclear gene expression. (1998) Plant Physiology. 118(3):803-15.

Jarvis, P., Chen, L.J., Li, H., Peto, C.A., Fankhauser, C., Chory, J. An Arabidopsis mutant defective in the plastid general protein import apparatus. (1998) Science. 282(5386):100-3.

Neff, M.M., Chory, J. Genetic interactions between phytochrome A, phytochrome B, and cryptochrome 1 during Arabidopsis development. (1998) Plant Physiology. 118(1):27-35.

Neff, M.M., Neff, J.D., Chory, J., Pepper, A.E. dCAPS, a simple technique for the genetic analysis of single nucleotide polymorphisms: experimental applications in Arabidopsis thaliana genetics. (1998) Plant Journal. 14(3):387-92.

Reed, J.W., Elumalai, R.P., Chory, J. Suppressors of an Arabidopsis thaliana phyB mutation identify genes that control light signaling and hypocotyl elongation. (1998) Genetics. 148(3):1295-310.

Li, J., Chory, J. Preparation of DNA from Arabidopsis. (1998) Methods in Molecular Biology. 82:55-60.

Elich, T.D., Chory, J. Biochemical characterization of Arabidopsis wild-type and mutant phytochrome B holoproteins. (1997) Plant Cell. 9(12):2271-80. DOI: 10.1105/tpc.9.12.2271

Hamazato, F., Shinomura, T., Hanzawa, H., Chory, J., Furuya, M. Fluence and wavelength requirements for Arabidopsis CAB gene induction by different phytochromes. (1997) Plant Physiology. 115(4):1533-40.

Elich, T.D., Chory, J. Phytochrome: if it looks and smells like a histidine kinase, is it a histidine kinase? (1997) Cell. 91(6):713-6.

Fujioka, S., Li, J., Choi, Y.H., Seto, H., Takatsuto, S., Noguchi, T., Watanabe, T., Kuriyama, H., Yokota, T., Chory, J., Sakurai, A. The Arabidopsis deetiolated2 mutant is blocked early in brassinosteroid biosynthesis. (1997) Plant Cell. 9(11):1951-62. DOI: 10.1105/tpc.9.11.1951

Anderson, S.L., Somers, D.E., Millar, A.J., Hanson, K., Chory, J., Kay, S.A. Attenuation of phytochrome A and B signaling pathways by the Arabidopsis circadian clock. (1997) Plant Cell. 9(10):1727-43. DOI: 10.1105/tpc.9.10.1727

Li, J., Chory, J. A putative leucine-rich repeat receptor kinase involved in brassinosteroid signal transduction. (1997) Cell. 90(5):929-38. DOI: https://doi.org/10.1016/S0092-8674(00)80357-8

Chory, J. Light modulation of vegetative development. (1997) Plant Cell. 9(7):1225-34. DOI: 10.1105/tpc.9.7.1225

Li, J., Biswas, M.G., Chao, A., Russell, D.W., Chory, J. Conservation of function between mammalian and plant steroid 5alpha-reductases. (1997) Proceedings of the National Academy of Sciences of the United States of America. 94(8):3554-9.

Pepper, A.E., Chory, J. Extragenic suppressors of the Arabidopsis det1 mutant identify elements of flowering-time and light-response regulatory pathways. (1997) Genetics. 145(4):1125-37.

Mulligan, R.M., Chory, J., Ecker, J.R. Signaling in plants. (1997) Proceedings of the National Academy of Sciences of the United States of America. 94(7):2793-5.

Surpin, M., Chory, J. The co-ordination of nuclear and organellar genome expression in eukaryotic cells. (1997) Essays Biochem. 32:113-125.

Fankhauser, C., Chory, J. Light control of plant development. (1997) Annual Review of Cell and Developmental Biology. 13:203-29. DOI: 10.1146/annurev.cellbio.13.1.203

Fujioka, S., Choi, Y.H., Takatsuto, S., Yokota, T., Li, J., Chory, J., Sakurai, A. Identification of castasterone, 6-deoxocastasterone, typhasterol and 6-deoxotyphasterol from the shoots of Arabidopsis thaliana. (1996) Plant & Cell Physiology. 37(8):1201-3.

Mochizuki, N., Susek, R., Chory, J. An intracellular signal transduction pathway between the chloroplast and nucleus is involved in de-etiolation. (1996) Plant Physiology. 112(4):1465-9.

Meehan, L., Harkins, K., Chory, J., Rodermel, S. Lhcb Transcription Is Coordinated with Cell Size and Chlorophyll Accumulation (Studies on Fluorescence-Activated, Cell-Sorter-Purified Single Cells from Wild-Type and immutans Arabidopsis thaliana). (1996) Plant Physiology. 112(3):953-963.

Chory, J., Chatterjee, M., Cook, R.K., Elich, T., Fankhauser, C., Li, J., Nagpal, P., Neff, M., Pepper, A., Poole, D., Reed, J., Vitart, V. From seed germination to flowering, light controls plant development via the pigment phytochrome. (1996) Proceedings of the National Academy of Sciences of the United States of America. 93(22):12066-71.

Reed, J.W., Foster, K.R., Morgan, P.W., Chory, J. Phytochrome B affects responsiveness to gibberellins in Arabidopsis. (1996) Plant Physiology. 112(1):337-42.

Li, J., Nagpal, P., Vitart, V., McMorris, T.C., Chory, J. A role for brassinosteroids in light-dependent development of Arabidopsis. (1996) Science. 272(5260):398-401.

Chory, J., Cook, R.K., Dixon, R., Elich, T., Li, H.M., Lopez, E., Mochizuki, N., Nagpal, P., Pepper, A., Poole, D. Signal-transduction pathways controlling light-regulated development in Arabidopsis. (1995) Philos. Trans. R. Soc. Lond., B, Biol. Sci. 350(1331):59-65. DOI: 10.1098/rstb.1995.0138

Li, H., Culligan, K., Dixon, R.A., Chory, J. CUE1: A Mesophyll Cell-Specific Positive Regulator of Light-Controlled Gene Expression in Arabidopsis. (1995) Plant Cell. 7(10):1599-1610. DOI: 10.1105/tpc.7.10.1599

Millar, A.J., Straume, M., Chory, J., Chua, N.H., Kay, S.A. The regulation of circadian period by phototransduction pathways in Arabidopsis. (1995) Science. 267(5201):1163-6.

Chory, J., Li, H.M., Mochizuki, N. Molecular methods for isolation of signal transduction pathway mutants. (1995) Methods in Cell Biology. 49:441-54.

Elich, T.D., Chory, J. Initial events in phytochrome signalling: still in the dark. (1994) Plant Molecular Biology. 26(5):1315-27.

Reed, J.W., Chory, J. Mutational analyses of light-controlled seedling development in Arabidopsis. (1994) Seminars in Cell Biology. 5(5):327-34.

Chory, J. Plant phototransduction. Phytochrome signal transduction. (1994) Current Biology. 4(9):844-6.

Pepper, A., Delaney, T., Washburn, T., Poole, D., Chory, J. DET1, a negative regulator of light-mediated development and gene expression in arabidopsis, encodes a novel nuclear-localized protein. (1994) Cell. 78(1):109-16.

Reed, J.W., Nagatani, A., Elich, T.D., Fagan, M., Chory, J. Phytochrome A and Phytochrome B Have Overlapping but Distinct Functions in Arabidopsis Development. (1994) Plant Physiology. 104(4):1139-1149.

Quail, P.H., Briggs, W.R., Chory, J., Hangarter, R.P., Harberd, N.P., Kendrick, R.E., Koornneef, M., Parks, B., Sharrock, R.A., Schafer, E., Thompson, W.F., Whitelam, G.C. Spotlight on Phytochrome Nomenclature. (1994) Plant Cell. 6(4):468-471. DOI: 10.1105/tpc.6.4.468

Chory, J., Reinecke, D., Sim, S., Washburn, T., Brenner, M. A Role for Cytokinins in De-Etiolation in Arabidopsis (det Mutants Have an Altered Response to Cytokinins). (1994) Plant Physiology. 104(2):339-347.

Li, H.M., Altschmied, L., Chory, J. Arabidopsis mutants define downstream branches in the phototransduction pathway. (1994) Genes & Development. 8(3):339-49.

Chory, J., Elich, T., Li, H.M., Pepper, A., Poole, D., Reed, J., Susek, R., Vitart, V., Washburn, T., Furuya, M. Genes controlling Arabidopsis photomorphogenesis. (1994) Biochem. Soc. Symp. 60:257-63.

Chory, J., Baldwin, A.S. Nondenaturing Polyacrylamide Gel Electrophoresis: Preparation and Analysis of DNA. (1994) Current Protocols in Molecular Biology. 25(1):2.7.1-2.7.8. DOI: 10.1002/j.1934-3647.1994.tb00221.x

Susek, R.E., Ausubel, F.M., Chory, J. Signal transduction mutants of Arabidopsis uncouple nuclear CAB and RBCS gene expression from chloroplast development. (1993) Cell. 74(5):787-99.

Li, H.M., Washburn, T., Chory, J. Regulation of gene expression by light. (1993) Current Opinion in Cell Biology. 5(3):455-60.

Chory, J. Out of darkness: mutants reveal pathways controlling light-regulated development in plants. (1993) Trends in Genetics. 9(5):167-72.

Nagatani, A., Reed, J.W., Chory, J. Isolation and Initial Characterization of Arabidopsis Mutants That Are Deficient in Phytochrome A. (1993) Plant Physiology. 102(1):269-277.

Reed, J.W., Nagpal, P., Poole, D.S., Furuya, M., Chory, J. Mutations in the gene for the red/far-red light receptor phytochrome B alter cell elongation and physiological responses throughout Arabidopsis development. (1993) Plant Cell. 5(2):147-57. DOI: 10.1105/tpc.5.2.147

Chory, J. Light signals in leaf and chloroplast development: photoreceptors and downstream responses in search of a transduction pathway. (1991) The New Biologist. 3(6):538-48.

Chory, J., Nagpal, P., Peto, C.A. Phenotypic and Genetic Analysis of det2, a New Mutant That Affects Light-Regulated Seedling Development in Arabidopsis. (1991) Plant Cell. 3(5):445-459. DOI: 10.1105/tpc.3.5.445

Chory, J., Aguilar, N., Peto, C.A. The phenotype of Arabidopsis thaliana det1 mutants suggests a role for cytokinins in greening. (1991) Symp. Soc. Exp. Biol. 45:21-9.

Chory, J., Peto, C.A. Mutations in the DET1 gene affect cell-type-specific expression of light-regulated genes and chloroplast development in Arabidopsis. (1990) Proceedings of the National Academy of Sciences of the United States of America. 87(22):8776-80.

Ohl, S., Hedrick, S.A., Chory, J., Lamb, C.J. Functional properties of a phenylalanine ammonia-lyase promoter from Arabidopsis. (1990) Plant Cell. 2(9):837-48. DOI: 10.1105/tpc.2.9.837

Chory, J., Peto, C.A., Ashbaugh, M., Saganich, R., Pratt, L., Ausubel, F. Different Roles for Phytochrome in Etiolated and Green Plants Deduced from Characterization of Arabidopsis thaliana Mutants. (1989) Plant Cell. 1(9):867-880. DOI: 10.1105/tpc.1.9.867

Chory, J., Peto, C., Feinbaum, R., Pratt, L., Ausubel, F. Arabidopsis thaliana mutant that develops as a light-grown plant in the absence of light. (1989) Cell. 58(5):991-9.

Chory, J., Voytas, D.F., Olszewski, N.E., Ausubel, F.M. Gibberellin-Induced Changes in the Populations of Translatable mRNAs and Accumulated Polypeptides in Dwarfs of Maize and Pea. (1987) Plant Physiology. 83(1):15-23.

Hoger, J.H., Chory, J., Kaplan, S. In vitro biosynthesis and membrane association of photosynthetic reaction center subunits from Rhodopseudomonas sphaeroides. (1986) J. Bacteriol. 165(3):942-50.

Donohue, T.J., Chory, J., Goldsand, T.E., Lynn, S.P., Kaplan, S. Structure and physical map of Rhodopseudomonas sphaeroides bacteriophage RS1 DNA. (1985) Journal of Virology. 55(1):147-57.

Chory, J., Muller, E.D., Kaplan, S. DNA-directed in vitro synthesis and assembly of the form II D-ribulose-1,5-bisphosphate carboxylase/oxygenase from Rhodopseudomonas sphaeroides. (1985) J. Bacteriol. 161(1):307-13.

Muller, E.D., Chory, J., Kaplan, S. Cloning and characterization of the gene product of the form II ribulose-1,5-bisphosphate carboxylase gene of Rhodopseudomonas sphaeroides. (1985) J. Bacteriol. 161(1):469-72.

Chory, J., Donohue, T.J., Varga, A.R., Staehelin, L.A., Kaplan, S. Induction of the photosynthetic membranes of Rhodopseudomonas sphaeroides: biochemical and morphological studies. (1984) J. Bacteriol. 159(2):540-54.

Chory, J., Kaplan, S. Light-dependent regulation of the synthesis of soluble and intracytoplasmic membrane proteins of Rhodopseudomonas sphaeroides. (1983) J. Bacteriol. 153(1):465-74.

Chory, J., Kaplan, S. The in vitro transcription-translation of DNA and RNA templates by extracts of Rhodopseudomonas sphaeroides. Optimization and comparison of template specificity with Escherichia coli extracts and in v (1982) Journal of Biological Chemistry. 257(24):15110-21.