Waitt Advanced Biophotonics Center

Research

Salk Institute for Biological Studies - Waitt Advanced Biophotonics Center - Research

2012 PUBLICATIONS


Nauhaus, I., Nielsen, K.J., Disney, A.A., Callaway, E.M. Orthogonal micro-organization of orientation and spatial frequency in primate primary visual cortex. (2012) Nature Neuroscience. 15(12):1683-1690. DOI: 10.1038/nn.3255

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Brennand, K.J., Simone, A., Tran, N., Gage, F.H. Modeling psychiatric disorders at the cellular and network levels. (2012) Molecular Psychiatry. 17(12):1239-53. DOI: 10.1038/mp.2012.20

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Fava, M., Targum, S.D., Nierenberg, A.A., Bleicher, L.S., Carter, T.A., Wedel, P.C., Hen, R., Gage, F.H., Barlow, C. An exploratory study of combination buspirone and melatonin SR in major depressive disorder (MDD): a possible role for neurogenesis in drug discovery. (2012) J Psychiatr Res. 46(12):1553-63. DOI: 10.1016/j.jpsychires.2012.08.013

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Marshel, J.H., Kaye, A.P., Nauhaus, I., Callaway, E.M. Anterior-posterior direction opponency in the superficial mouse lateral geniculate nucleus. (2012) Neuron. 76(4):713-720. DOI: 10.1016/j.neuron.2012.09.021

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Goulding, M. Motor neurons that multitask. (2012) Neuron. 76(4):669-70. DOI: 10.1016/j.neuron.2012.11.011

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Winner, B., Regensburger, M., Schreglmann, S., Boyer, L., Prots, I., Rockenstein, E., Mante, M., Zhao, C., Winkler, J., Masliah, E., Gage, F.H. Role of α-synuclein in adult neurogenesis and neuronal maturation in the dentate gyrus. (2012) Journal of Neuroscience. 32(47):16906-16. DOI: 10.1523/JNEUROSCI.2723-12.2012

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Bellin, M., Marchetto, M.C., Gage, F.H., Mummery, C.L. Induced pluripotent stem cells: the new patient? (2012) Nature Reviews Molecular Cell Biology. 13(11):713-26. DOI: 10.1038/nrm3448

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Levine, A.J., Lewallen, K.A., Pfaff, S.L. Spatial organization of cortical and spinal neurons controlling motor behavior. (2012) Current Opinion in Neurobiology. 22(5):812-21. DOI: 10.1016/j.conb.2012.07.002

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Toups, J.V., Fellous, J.M., Thomas, P.J., Sejnowski, T.J., Tiesinga, P.H. Multiple spike time patterns occur at bifurcation points of membrane potential dynamics. (2012) PLOS Computational Biology. 8(10):e1002615. DOI: 10.1371/journal.pcbi.1002615

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Catterall, W.A., Raman, I.M., Robinson, H.P., Sejnowski, T.J., Paulsen, O. The Hodgkin-Huxley heritage: from channels to circuits. (2012) Journal of Neuroscience. 32(41):14064-14073. DOI: 10.1523/JNEUROSCI.3403-12.2012

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Vilchez, D., Boyer, L., Morantte, I., Lutz, M., Merkwirth, C., Joyce, D., Spencer, B., Page, L., Masliah, E., Berggren, W.T., Gage, F.H., Dillin, A. Increased proteasome activity in human embryonic stem cells is regulated by PSMD11. (2012) Nature. 489(7415):304-8. DOI: 10.1038/nature11468

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Eickenberg, M., Rowekamp, R.J., Kouh, M., Sharpee, T.O. Characterizing responses of translation-invariant neurons to natural stimuli: maximally informative invariant dimensions. (2012) Neural Computation. 24(9):2384-421. DOI: 10.1162/NECO_a_00330

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Nadkarni, S., Bartol, T.M., Stevens, C.F., Sejnowski, T.J., Levine, H. Short-term plasticity constrains spatial organization of a hippocampal presynaptic terminal. (2012) Proceedings of the National Academy of Sciences of the United States of America. 109(36):14657-14662. DOI: 10.1073/pnas.1211971109

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Volman, V., Bazhenov, M., Sejnowski, T.J. Computational models of neuron-astrocyte interaction in epilepsy. (2012) Frontiers in Computational Neuroscience. 6:58. DOI: 10.3389/fncom.2012.00058

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Boyer, L.F., Campbell, B., Larkin, S., Mu, Y., Gage, F.H. Dopaminergic differentiation of human pluripotent cells. (2012) Curr Protoc Stem Cell Biol. Chapter 1:Unit1H.6. DOI: 10.1002/9780470151808.sc01h06s22

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Callaway, E.M., Marder, E. Common features of diverse circuits. (2012) Current Opinion in Neurobiology. 22(4):565-567. DOI: 10.1016/j.conb.2012.07.003


Egawa, N., Kitaoka, S., Tsukita, K., Naitoh, M., Takahashi, K., Yamamoto, T., Adachi, F., Kondo, T., Okita, K., Asaka, I., Aoi, T., Watanabe, A., Yamada, Y., Morizane, A., Takahashi, J., Ayaki, T., Ito, H., Yoshikawa, K., Yamawaki, S., Suzuki, S., Watanabe, D., Hioki, H., Kaneko, T., Makioka, K., Okamoto, K., Takuma, H., Tamaoka, A., Hasegawa, K., Nonaka, T., Hasegawa, M., Kawata, A., Yoshida, M., Nakahata, T., Takahashi, R., Marchetto, M.C., Gage, F.H., Yamanaka, S., Inoue, H. Drug screening for ALS using patient-specific induced pluripotent stem cells. (2012) Science Translational Medicine. 4(145):145ra104. DOI: 10.1126/scitranslmed.3004052

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Macfarlan, T.S., Gifford, W.D., Driscoll, S., Lettieri, K., Rowe, H.M., Bonanomi, D., Firth, A., Singer, O., Trono, D., Pfaff, S.L. Embryonic stem cell potency fluctuates with endogenous retrovirus activity. (2012) Nature. 487(7405):57-63. DOI: 10.1038/nature11244

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Giorgetti, A., Marchetto, M.C., Li, M., Yu, D., Fazzina, R., Mu, Y., Adamo, A., Paramonov, I., Cardoso, J.C., Monasterio, M.B., Bardy, C., Cassiani-Ingoni, R., Liu, G.H., Gage, F.H., Izpisua Belmonte, J.C. Cord blood-derived neuronal cells by ectopic expression of Sox2 and c-Myc. (2012) Proceedings of the National Academy of Sciences of the United States of America. 109(31):12556-61. DOI: 10.1073/pnas.1209523109

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Nielsen, K.J., Callaway, E.M., Krauzlis, R.J. Viral vector-based reversible neuronal inactivation and behavioral manipulation in the macaque monkey. (2012) Frontiers in Systems Neuroscience. 6:48. DOI: 10.3389/fnsys.2012.00048

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Marchetto, M.C., Gage, F.H. Modeling brain disease in a dish: really? (2012) Cell Stem Cell. 10(6):642-5. DOI: 10.1016/j.stem.2012.05.008

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Zhao, C., Warner-Schmidt, J., Duman, R.S., Gage, F.H. Electroconvulsive seizure promotes spine maturation in newborn dentate granule cells in adult rat. (2012) Developmental Neurobiology. 72(6):937-42. DOI: 10.1002/dneu.20986

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Atencio, C.A., Sharpee, T.O., Schreiner, C.E. Receptive field dimensionality increases from the auditory midbrain to cortex. (2012) Journal of Neurophysiology. 107(10):2594-603. DOI: 10.1152/jn.01025.2011

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Nimmerjahn, A. Two-photon imaging of microglia in the mouse cortex in vivo. (2012) Cold Spring Harbor Protocols. 2012(5). DOI: 10.1101/pdb.prot069294

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Nimmerjahn, A. Optical window preparation for two-photon imaging of microglia in mice. (2012) Cold Spring Harbor Protocols. 2012(5). DOI: 10.1101/pdb.prot069286

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Nimmerjahn, A. Surgical implantation of a head plate in mice in preparation for in vivo two-photon imaging of microglia. (2012) Cold Spring Harbor Protocols. 2012(5). DOI: 10.1101/pdb.prot069278

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Yao, J., Mu, Y., Gage, F.H. Neural stem cells: mechanisms and modeling. (2012) Protein & Cell. 3(4):251-61. DOI: 10.1007/s13238-012-2033-6

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Bonjean, M., Baker, T., Bazhenov, M., Cash, S., Halgren, E., Sejnowski, T. Interactions between core and matrix thalamocortical projections in human sleep spindle synchronization. (2012) Journal of Neuroscience. 32(15):5250-5263. DOI: 10.1523/JNEUROSCI.6141-11.2012

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Tanaka, H., Krakauer, J.W., Sejnowski, T.J. Generalization and multirate models of motor adaptation. (2012) Neural Computation. 24(4):939-966. DOI: 10.1162/NECO_a_00262

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Gage, F.H. Transplantation in the future. (2012) Progress in Brain Research. 200:7-13. DOI: 10.1016/B978-0-444-59575-1.00001-6

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Gage, F.H., Muotri, A.R. What makes each brain unique. (2012) Sci. Am. 306(3):26-31.


Li, Y., Aimone, J.B., Xu, X., Callaway, E.M., Gage, F.H. Development of GABAergic inputs controls the contribution of maturing neurons to the adult hippocampal network. (2012) Proceedings of the National Academy of Sciences of the United States of America. 109(11):4290-5. DOI: 10.1073/pnas.1120754109

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Nimmerjahn, A., Helmchen, F. In vivo labeling of cortical astrocytes with sulforhodamine 101 (SR101). (2012) Cold Spring Harbor Protocols. 2012(3):326-34. DOI: 10.1101/pdb.prot068155

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Ramirez-Moreno, D.F., Sejnowski, T.J. A computational model for the modulation of the prepulse inhibition of the acoustic startle reflex. (2012) Biol Cybern. 106(3):169-176. DOI: 10.1007/s00422-012-0485-7

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Powell, S.B., Sejnowski, T.J., Behrens, M.M. Behavioral and neurochemical consequences of cortical oxidative stress on parvalbumin-interneuron maturation in rodent models of schizophrenia. (2012) Neuropharmacology. 62(3):1322-31. DOI: 10.1016/j.neuropharm.2011.01.049

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Ge, W.P., Miyawaki, A., Gage, F.H., Jan, Y.N., Jan, L.Y. Local generation of glia is a major astrocyte source in postnatal cortex. (2012) Nature. 484(7394):376-80. DOI: 10.1038/nature10959

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Bracko, O., Singer, T., Aigner, S., Knobloch, M., Winner, B., Ray, J., Clemenson, G.D., Suh, H., Couillard-Despres, S., Aigner, L., Gage, F.H., Jessberger, S. Gene expression profiling of neural stem cells and their neuronal progeny reveals IGF2 as a regulator of adult hippocampal neurogenesis. (2012) Journal of Neuroscience. 32(10):3376-87. DOI: 10.1523/JNEUROSCI.4248-11.2012

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Thuret, S., Thallmair, M., Horky, L.L., Gage, F.H. Enhanced functional recovery in MRL/MpJ mice after spinal cord dorsal hemisection. (2012) PLOS One. 7(2):e30904. DOI: 10.1371/journal.pone.0030904

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Bonanomi, D., Chivatakarn, O., Bai, G., Abdesselem, H., Lettieri, K., Marquardt, T., Pierchala, B.A., Pfaff, S.L. Ret is a multifunctional coreceptor that integrates diffusible- and contact-axon guidance signals. (2012) Cell. 148(3):568-82. DOI: 10.1016/j.cell.2012.01.024

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Shimozaki, K., Zhang, C.L., Suh, H., Denli, A.M., Evans, R.M., Gage, F.H. SRY-box-containing gene 2 regulation of nuclear receptor tailless (Tlx) transcription in adult neural stem cells. (2012) Journal of Biological Chemistry. 287(8):5969-78. DOI: 10.1074/jbc.M111.290403

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Nauhaus, I., Nielsen, K.J., Callaway, E.M. Nonlinearity of two-photon Ca2+ imaging yields distorted measurements of tuning for V1 neuronal populations. (2012) Journal of Neurophysiology. 107(3):923-936. DOI: 10.1152/jn.00725.2011

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Lee, S.W., Clemenson, G.D., Gage, F.H. New neurons in an aged brain. (2012) Behavioural Brain Research. 227(2):497-507. DOI: 10.1016/j.bbr.2011.10.009

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Kerr, J.N., Nimmerjahn, A. Functional imaging in freely moving animals. (2012) Current Opinion in Neurobiology. 22(1):45-53. DOI: 10.1016/j.conb.2011.12.002

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Vivar, C., Potter, M.C., Choi, J., Lee, J.Y., Stringer, T.P., Callaway, E.M., Gage, F.H., Suh, H., van Praag, H. Monosynaptic inputs to new neurons in the dentate gyrus. (2012) Nature Communications. 3:1107. DOI: 10.1038/ncomms2101

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Sharpee, T.O. Adaptive switches in midbrain circuits. (2012) Neuron. 73(1):6-7. DOI: 10.1016/j.neuron.2011.12.017

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Gage, F.H. ISSCR: beginning the next chapter. (2012) Cell Stem Cell. 10(1):29-31. DOI: 10.1016/j.stem.2011.12.009


Han, J., Denli, A.M., Gage, F.H. The enemy within: intronic miR-26b represses its host gene, ctdsp2, to regulate neurogenesis. (2012) Genes & Development. 26(1):6-10. DOI: 10.1101/gad.184416.111

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Stam, F.J., Hendricks, T.J., Zhang, J., Geiman, E.J., Francius, C., Labosky, P.A., Clotman, F., Goulding, M. Renshaw cell interneuron specialization is controlled by a temporally restricted transcription factor program. (2012) Development. 139(1):179-90. DOI: 10.1242/dev.071134

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Brennand, K.J., Gage, F.H. Modeling psychiatric disorders through reprogramming. (2012) Dis Model Mech. 5(1):26-32. DOI: 10.1242/dmm.008268

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Nhan, H.L., Callaway, E.M. Morphology of superior colliculus- and middle temporal area-projecting neurons in primate primary visual cortex. (2012) Journal of Comparative Neurology. 520(1):52-80. DOI: 10.1002/cne.22685

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Ikrar, T., Shi, Y., Velasquez, T., Goulding, M., Xu, X. Cell-type specific regulation of cortical excitability through the allatostatin receptor system. (2012) Front Neural Circuits. 6:2. DOI: 10.3389/fncir.2012.00002

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Israel, M.A., Yuan, S.H., Bardy, C., Reyna, S.M., Mu, Y., Herrera, C., Hefferan, M.P., Van Gorp, S., Nazor, K.L., Boscolo, F.S., Carson, C.T., Laurent, L.C., Marsala, M., Gage, F.H., Remes, A.M., Koo, E.H., Goldstein, L.S. Probing sporadic and familial Alzheimer's disease using induced pluripotent stem cells. (2012) Nature. 482(7384):216-20. DOI: 10.1038/nature10821

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Boyce, V.S., Park, J., Gage, F.H., Mendell, L.M. Differential effects of brain-derived neurotrophic factor and neurotrophin-3 on hindlimb function in paraplegic rats. (2012) Eur. J. Neurosci. 35(2):221-32. DOI: 10.1111/j.1460-9568.2011.07950.x

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